Sequence
atgc intronic sequence ATGC exonic sequence...gaatcttggttgtcattgtttcatcagataagagtattttcttaggttatctctttccctcaactcacgggtactaaaaggagaattgttgtggatgcagCTGGCAGCTCTGGACTTTATTGCCTGTGCAACTGCTGATGTGTTTGCCATGACTGACTCTGGGAGCCAATTATCATCCTTGGTGTCGGGGTTCCGAACGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g01470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G30070.1 (Glycine max), 3'ss of exon 8
----gaatcttggttgtcattgtttcatcagataagagtattttcttaggttatctctttccctcaactcacgggtactaaaaggagaattgttgtggatgcagCTGGCAGCTCTGGACTTTATTGCCTGTGCAACTGCTGATGTGTTTGCCATGACTGACTCTGGGAGCCAATTATCATCCTTGGTGTCGGGGTTCCGAACGT
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acttgatttataacgaggggaaattcattagcgacgatttttatctgtgacaatattgttaatgtcaataactaataatgtta----acttgatgtgaatgcagTTGGCTGCTTTGGATTTCATTGCATGTGCAAGTGCTGATGTATTTGCTATGACTGACTCTGGTAGCCAACTTTCATCATTGGTATCTGGATTCAGAACCT
upper sequence: Vv10s0003g01470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G09080.1 (Glycine max), 3'ss of exon 8
gaatcttggttgtcattgtttcatcagataagagtattttcttaggttatctctttccctcaa-----ctcacgggtactaaaaggagaa-ttgttgtggatgcagCTGGCAGCTCTGGACTTTATTGCCTGTGCAACTGCTGATGTGTTTGCCATGACTGACTCTGGGAGCCAATTATCATCCTTGGTGTCGGGGTTCCGAACGT
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---ctttacttgg---tttataactaggggaaattcattaacgaagatttttatctgtgacaatattgttaatgtcaactataatgttaacttgatgtcaatgcagTTGGCTGCTTTGGATTTCATTACATGTGCAAGTGCTGATGTATTTGCTATGACTGACTCTGGTAGCCAACTTTCATCATTGGTATCTGGATTCAGAACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttatctctttccctcaactcacgggtactaaaaggagaattgttgtggatgcagCTGGCAGCTCTGGACTTTATTGCCTGTGCAACTGCTGATGTGTTTGCCATGACTGACTCTGGGAGCCAATTATCATCCTTGGTGTCGGGGTTCCGAACGT
tactaaa putative branch site (score: 1)
tactaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaatcttggttgtcattgtttcatcagataagagtattttcttaggttatctctttccctcaactcacgggtactaaaaggagaattgttgtggatgcagCTGGCAGCTCTGGACTTTATTGCCTGTGCAACTGCTGATGTGTTTGCCATGACTGACTCTGGGAGCCAATTATCATCCTTGGTGTCGGGGTTCCGAACGT
- - - tggttgt
- - - - - - - - - - - - - gataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagga