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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacactttacttgtttcttttctatatgtaaaattaatgacattgagactactaatctagctaatcctaacttgattcatttattctgtctctgcagTATTTTACAACTATTTATGGCTACCCTTTATTCCATTGGTG

Basic information

species Vitis vinifera
transcript Vv10s0003g00410.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110717499|gb|EE093407.1|EE093407
EST:     AGTTTCTCCATGCTTTTTGTGTTCTTCAATGCTCAAG                         TATTTTACAACTATTTATGGCTACCCTTTATTCCATTGGTG
genomic: AGTTTCTCCATGCTTTTTGTGTTCTTCAATGCTCAAGgtaacacttt ... gtctctgcagTATTTTACAACTATTTATGGCTACCCTTTATTCCATTGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagactactaatctagctaatcctaacttgattcatttattctgtctctgcagTATTTTACAACTATTTATGGCTACCCTTTATTCCATTGGTG
                                     tttattctgtctct  CT-rich tract
                             ttgattcatttatt  TA-rich tract