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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttattagtcttaagaaatgacattcccatgtctactttcgtctagctttcattttcccatcgttggtcgagcttcttgtaatttgagtccataaatgcagCAAAAATGTGGTGCTACTGTCGGTTGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTTGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG

Basic information

species Vitis vinifera
transcript Vv09s0054g01520.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 6
-------------------gtttattagtc-ttaagaaatgacattcccatgtctactttcgtctagctttcattttcccatcgttggtcgagc--ttcttgtaa------tttgagtccataaatgcagCAAAAATGTGGTGCTACTGTCGGTTGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTTGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG
                    ||| ||| || ||  | ||  | |     |||  |       |  |  |   | ||    || | | |  ||    || || ||       |||   |  |  |||||||| |||||||||||||| ||||| ||| | || ||||||||||| ||||||||||| |||  |||||| ||  |||| || ||  | ||  || |  ||||
gttgaatgatttaattttgatttgttactcattgtgtaacaatacataaatgagtttgagtatacaattaatacttaattattgattgatgaatatttattatatctcatttttaccttaaacaatgcagCTAAAATGTGGTGCTATTGTCGATTGATATATATGCCCATGTCTTACTTATATGGAAAAAAATTTGTGGGTTCAATAACGCCATTAGTCTTAAACTTGAG

upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 5
-----gtttattagtcttaagaaatgacatt-cccatgtctactttcgtctagctt--tcattttcccatcgttggtcgagcttcttgtaatttgagtccataaatgcagCAAAAATGTGGTGCTACTGTCGGTTGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTTGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG
      || |||| | |||     | ||  |          |  |   | ||  ||  | | | | | ||  ||  ||        |    |     |  |  | || ||| || |||||||| |||||||| ||||| |||||||| ||||| ||||||||||| ||  | ||||| || ||||||||||| ||  |  || || | ||
gtagatttaattaattttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtagCTAAGATGTGGTGTTACTGTCGATTGGTATACATGCCTATGTCTTACTTATATGGGAAGAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTAAG

upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 2
-----gtttatta-gtcttaagaaatgaca-ttcccatgtctactttcgtctagct--ttcattttcccatcgttggtcga-gcttcttgtaatttgagtccataaatgcagCAAAAATGTGGTGCTACTGTCGGTTGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTTGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG
     |||||||   | |||     | ||  ||       | |  |  || ||  |  || | | | | ||  ||  ||   |  |||  |  ||       || | || ||| ||||||||||| || ||||| ||||| || ||||| ||||| ||||||||||| ||| | ||||| || ||||||||||| ||  |  || || ||||
gttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcatt-ttcaccataattattgtagCTAAAATGTGGTGTTATTGTCGATTGGTATATATGCCTATGTCTTACTTATATGGGAAAAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTGAG

upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 5
-----gtttattagtcttaagaaatgaca-ttcccatgtctactttcgtctagctt--tcattttcccatcgttggtcgagcttcttgtaatttgagtccataaatgcagCAAAAATGTGGTGCTACTGTCGGTTGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTTGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG
      || ||||   |||     | ||  ||         |  |   | ||  ||  | | | | | ||   |  ||        |    |||   |  || | || ||| || |||||||| || ||||| ||||| |||||||||||||| || |||||||| ||  | ||||| || ||||||||||| ||  |  || || | ||
gtatatttgattaactttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtagCTAAGATGTGGTGTTATTGTCGATTGGTATACATGCCCATGTCTTATTTATATGGGAAGAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcattttcccatcgttggtcgagcttcttgtaatttgagtccataaatgcagCAAAAATGTGGTGCTACTGTCGGTTGGTTTACATGCCCATGTCATACTTATATGGTAAACGATTTGTTGGCCCAATCACACCTCTTGTTCTAGAACTGAG
                              ttgtaattt  TA-rich tract