Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatcttgaattccattgtttatggctttactttaaccagaatctactttggtttctcatggtccatttacttcgtattgcttgaaatcttgaagGTCAAGGACAATCCTTCCGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATAAGGATCATGGTTGGCAAGTTTCTG

Basic information

species Vitis vinifera
transcript Vv09s0054g01230.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 3
--gtttgatcttga--attccattgtttatggctttact-ttaaccagaatctactttggtttctcatggtc-catttacttcgtattgcttgaaatcttgaagGTCAAGGACAATCCTTCCGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATAAGGATCATGGTTGGCAAGTTTCTG
   |||    ||||  | |  |||  |  | | |  ||| || | ||  || |   ||| |||    | ||   | | |  | | |||  |    || ||  |||| || || ||||||   || || |||||||| ||||| || || ||||| |||||||| ||||||||||| ||| | |||||||| |||||||||||||
atatttataattgattactaaattagtgtttgttagactattgaacaatatgtttgttgtttttatctagtaataatgaactggcattctt----attttatagGTAAAAGATAATCCTCTTGGAGATTTTAAAAGTATGTATCGTCATATTTCTAAAGGATCTTGGACATTCTCTGATCAAGATCATGGATGGCAAGTTTCTG

upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 9
-----gtttg-atcttgaattccattgtttatggctttactttaaccagaatctactttggtttctcatggtccatttacttcgtattgcttgaaatcttgaagGTCAAGGACAATCCTTCCGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATAAGGATCATGGTTGGCAAGTTTCTG
     || |  |||| | | |       |      || | |||       |   |      |||   |   |    | | || | |||  |    || ||  |||| ||||| |||||||  || || |||||||| ||| | || || ||||| ||||| || ||||||||||| ||| | || ||||| |||||||||||||
ttgttgtctatatctagtagtaatgaactagcattttcattttgtaggcgaaggataacccttttggagatttttatgaattggcattctt----attttatagGTGAAGGATAATCCTTTTGGAGATTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTG

upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 6
--------gtttgatcttgaattccattgtttatggctttactttaaccagaatctactttggtttctcatggtc-catttacttcgtattgcttgaaatcttgaagGTCAAGGACAATCCTTCCGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATAAGGATCATGGTTGGCAAGTTTCTG
          ||||   | || |  | |||| ||    |||||| |   || || |   || | ||  ||| ||   | | | ||   |||  |    || |  ||||| |  ||||| ||||| || || ||||| || ||||| || || ||| | ||||| || ||||||||||||||| | || ||||| |||||||||||||
taatttataattgactattaagtt-agtgttcattagattacttaag--agtatgtttgttagctttacatagtagtaatgaattgacattctt----atttcaaagGTGAGAGACAACCCTTCAGGAGATTTTAAGAGTATGTATCGTCATATTACTAAAGGGTCTTGGACATTCTCAGATCAAGACCATGGATGGCAAGTTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctactttggtttctcatggtccatttacttcgtattgcttgaaatcttgaagGTCAAGGACAATCCTTCCGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATAAGGATCATGGTTGGCAAGTTTCTG
                         atttactt  TA-rich tract