1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaacaactgaactaactcaaaataattgttatacggacacttttattgtttatttctcttgtgcagGCTATTCTATTATTATCTAAACTTCCATTGGAAACAGTTGGGGAACCATTAGATATGGAGCAATTGTTTGATGCTGTAAATGTTATCCTTTCATTACAG
species | Vitis vinifera |
transcript | Vv09s0054g01120.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
ctaactcaaaataattgttatacggacacttttattgtttatttctcttgtgcagGCTATTCTATTATTATCTAAACTTCCATTGGAAACAGTTGGGGAACCATTAGATATGGAGCAATTGTTTGATGCTGTAAATGTTATCCTTTCATTACAG
aactaac putative branch site (score: 1)
cttttattgtttattt putative PPT
tcaaaataattgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaactgaactaactcaaaataattgttatacggacacttttattgtttatttctcttgtgcagGCTATTCTATTATTATCTAAACTTCCATTGGAAACAGTTGGGGAACCATTAGATATGGAGCAATTGTTTGATGCTGTAAATGTTATCCTTTCATTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG