Sequence
atgc intronic sequence ATGC exonic sequencegtctgtttattttctcagtggatgacttccaatgcctcttttaatgtttccaagtgttaagctgcttcttctgttactgttacagCCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G79650.1 (Arabidopsis thaliana), 3'ss of exon 9
---------gtctg---tttattttctcagtggatgacttccaatgcctcttttaatgtttccaag--tgttaagctgcttcttctgttactgttac-agCCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAG
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gtaagactcgtctagttttcgttatcctggtccagtagtttgtaagact-tctcactgattccgaacctcttatgttggaacaactgcttttgttaccagCCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGG
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G79650.3 (Arabidopsis thaliana), 3'ss of exon 8
-gtctgtttattttctcagtggatgacttccaatgcctcttttaatgtttccaag--tgttaagctgcttcttctgttactgttac-agCCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAG----------
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ctagttttcgttatcctggtccagtagtttgtaagact-tctcactgattccgaacctcttatgttggaacaactgcttttgttaccagcccatgcttcagGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGG
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G16190.1 (Arabidopsis thaliana), 3'ss of exon 9
gtctgtttattttctcagtggatgacttccaat----gcct---cttttaatgtttccaagtgttaagctgcttctt--ctgttactgttacagCCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAG
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-----------------gtgagtgaatcttaatcttagtctgactttttattgcttctgaacatctcacgatttcattgctgtttctgttacagCCTATGCTTCAAGAGCTCGGAAAGCAGAACCCCCAACTTCTGAGGCTAATTCAAGAGAACCAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71869952|gb|DT019007.1|DT019007EST: TTTCAAGCACTGCGTGCGATGGTACAAGCAAACCCGCAAATTTTACAG CCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATT
genomic: TTTCAAGCACTGCGTGCGATGGTACAAGCAAACCCGCAAATTTTACAGgtctgtttat ... actgttacagCCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgcctcttttaatgtttccaagtgttaagctgcttcttctgttactgttacagCCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAG
ttttaat putative branch site (score: 3)
cttcttctgttact putative PPT
ttttaatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgtttattttctcagtggatgacttccaatgcctcttttaatgtttccaagtgttaagctgcttcttctgttactgttacagCCCATGCTTCAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG