Sequence
atgc intronic sequence ATGC exonic sequencegtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G42890.1 (Glycine max), 3'ss of exon 9
gtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGC
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----gtatgtgtcattttattttatattcttgggctttgagattcaattatttgagctgttgaaggttttgtgcagGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTTGACATGTTCCCACACACCCCTCATATTGAGTGTGTTTGCCTTCTGGAGC
upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G42890.2 (Glycine max), 3'ss of exon 9
gtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGC
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----gtatgtgtcattttattttatattcttgggctttgagattcaattatttgagctgttgaagGTTTTGTGCAGGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTTGACATGTTCCCACACACCCCTCATATTGAGTGTGTTTG-----------
upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G02550.1 (Glycine max), 3'ss of exon 8
gtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGC
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----gtatgtgtcattttattttatattattaggctttgggattcaattatttgagctgttaaaggttttgtgcagGTGGAACAGAATATAAAAGGATGTTACAAGTTAATAAGCCTACAGCCAGTTGACATGTTCCCACACACACCTCATATTGAGTGCGTTTGCCTTCTGGAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110360458|gb|EC923573.1|EC923573EST: GTAATCCTGCCACATGTGCACGCGACCTCGATTACCTTTGTCATGGTGTG GTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTG
genomic: GTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatct ... cttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGC
acttaat putative branch site (score: 4)
aacttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG