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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgggcaggaatttgtacatgccattttatttttgttctaccctctgagtctgggtaatttctctttaaaacaatttactttctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATCCTTTTACACCGTGACTTTAAAACCCTTCGCCAAGTCTTGATTCAGCGTC

Basic information

species Vitis vinifera
transcript Vv09s0002g02590.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G091494_T02 (Zea mays), 3'ss of exon 9
gtaatgggcaggaatttgtacatgccattttatttttgttctaccctctgagtctgggtaatttctctttaaaacaatttactttctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATCCTTTTACACCGTGACTTTAAAACCCTTCGCCAAGTCTTGATTCAGCGTC
||||    || ||| |   | |||  ||||  | ||| || |   ||      ||   |   || |||| |||                | ||||| ||||||||||| || |||||||||||||||||| | || || |||      ||  | |||||  |     |||| ||||||||| | || |||||||
gtaaataccatgaagtgaaagatg--atttgttctttatttttggcttcttaccttatttccttttcttaaaa----------------tgcagGTCTTTGGTCTTTACTTTATGCAGTCATATATTGGGTTATTTTACCATGCTTCATTGTATCGTGATATACTGGCCCTCCGCCAAGTCCTCATCCAGCGTC

upper sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G20980.2 (Glycine max), 3'ss of exon 10
gtaatgggcaggaatttgtacatgccattttatttttgttctaccctctgagtctgggtaatttctctttaaaacaatttactttctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATCCTTTTACACCGTGACTTTAAAACCCTTCGCCAAGTCTTGATTCAGCGTC
||||||| |  | |||  ||  | |||| ||  |||| ||| ||| | |    ||      |    ||    |    ||||||||||||  ||||| |||||||| || ||||||||| |||| |||||  |||| ||||||  | | || || ||| | |||  ||| ||||||||||| ||||||||||| |
gtaatgg-cgcggattgataggtaccatgttgctttttttc-accttat---cctaaacgttgaacct----aggggtttactttctctcgcagGTGTTTGGTCTGTACTTCATGCAGACATACATTGGAATCTTTTATCATGCCTTGTTGCATCGTAATTTTTCAACTCTTCGCCAAGTGTTGATTCAGCGGC

upper sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G73020.2 (Arabidopsis thaliana), 3'ss of exon 10
gtaatgggcaggaatttgtacatgccattttatttttgttctaccctctgagtctgggtaatttctctttaaaacaatttactttctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATCCTTTTACACCGTGACTTTAAAACCCTTCGCCAAGTCTTGATTCAGCGTC
                |    |   |||| | ||   |    ||  | |   |||     | |  |   ||    |||||  |     || ||||| ||||| || ||||| |||||| ||||||||||| |||| |||||| | |||||||| ||  |||| |  || ||||| ||||| ||||| || ||  
---------------gtaagaaaagcattgttttgcagagtcactgtttc--tcttttctaatcattgctatggaaattt--tcggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTTTTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687623|gb|EE065247.1|EE065247
EST:     ATGAAAGCAATGAAAGCACAGAATATAGGGCCGACAGCTTGGTTTACAAG                         GTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATC
genomic: ATGAAAGCAATGAAAGCACAGAATATAGGGCCGACAGCTTGGTTTACAAGgtaatgggca ... tctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATC
EST: gi|110698301|gb|EE075671.1|EE075671
EST:     ATGAAAGCAATGAAAGCACAGAATATAGGGCCGACAGCTTGGTTTACAAG                         GTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATC
genomic: ATGAAAGCAATGAAAGCACAGAATATAGGGCCGACAGCTTGGTTTACAAGgtaatgggca ... tctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaccctctgagtctgggtaatttctctttaaaacaatttactttctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATCCTTTTACACCGTGACTTTAAAACCCTTCGCCAAGTCTTGATTCAGCGTC
                                      tttactttctcttcc  CT-rich tract
                   taatttctctttaaaa  TA-rich tract