Sequence
atgc intronic sequence ATGC exonic sequence...aatttaatttaatataagcctatattcatctctcatttgttaatgcaagacaataaatatgtttcaatgcatgacaagtactgtcttatctatttcccagGTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0105g00480.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os03g18080.2 (Oryza sativa), 3'ss of exon 9
aattta-atttaatataagcctatattcatctctcatttgttaat--gcaagacaataaatatgtttcaatgcatgacaagtactgtcttatctatttcccagGTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACT
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-gtttatagccctttaaggaatgtgtacaagtttggagtgtcatttagtttgatgttgtcccatttccagtgcctcacaat--cttattcactcccttgttagGTTCGAGGCTCCATTCCACTTCTCTGGGAGCAAATAGTGGATTTAAGCTACAAACCATGTCTCAACATAATTGAACATGAGGAAACG
upper sequence: Vv08s0105g00480.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G047894_T03 (Zea mays), 3'ss of exon 8
------aatttaatttaatataagcctatattcatctctcatttgttaatgcaagacaataaatatgtttcaatgcatgacaagtactgtcttatctatttcccagGTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACT
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gatacacatttaattgtccttgaa--tgttttagaatgttgtttacttgtgtcccattttcaatgctttacaa-gcttactcgttcccttgctat---tttgttagCTTCGAGGTTCAATTCCACTTCTCTGGGAGCAAATAGTGGATTTAAGCTACAAACCACGGCTTAGCATTATTGAACATGAAGAAACT
upper sequence: Vv08s0105g00480.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G51830.1 (Arabidopsis thaliana), 3'ss of exon 9
aatttaatttaatataagcctatattcatctctcatttgttaatgcaagacaataaatatgtttcaatgcatg--acaagtactgtcttatct--atttcccagGTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACT
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----tctctcaacttagtttattataccttgcttttctctttctctgtgtttaaggttccctttcatttcttgcgattgtaactgtcttgctttcactgactagGTTCGAGGTTCAATCCCACTTCTTTGGGAGCAGATCGTTGATTTGAGTTATAAGCCACGGCTTAAGATAAATAAGCATGAAGAGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caagacaataaatatgtttcaatgcatgacaagtactgtcttatctatttcccagGTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACT
tcttatctatttccc CT-rich tract
aataaatatgtttcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatttaatttaatataagcctatattcatctctcatttgttaatgcaagacaataaatatgtttcaatgcatgacaagtactgtcttatctatttcccagGTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACT
- - - - - - - - - - - - -tcatctc
- - - - - - - - - - - - - - - - - - - - - - - aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgca