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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcttgtgccagttaatcaatttttcattttacttcttttgttcatactgaacttttatgctactttcactttttaaattaaaaagCCAAACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAAAGCACCCTTATGTTGAGCGCAATCTTGGTCCTGTTGTTAGCATCATAAG

Basic information

species Vitis vinifera
transcript Vv08s0056g01320.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G24130.1 (Glycine max), 3'ss of exon 11
--gtattgcttgtgccagttaatcaatttttcattttacttcttttgtt-catactgaacttttatgctactttcactttttaaattaaaaagCCAAACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAAAGCACCCTTATGTTGAGCGCAATCTTGGTCCTGTTGTTAGCATCATAAG
   |    ||||||| | ||       | || || |||    ||| | |  || || |   ||||   |   || ||||      || |||||| || ||||||||| | || || |||||| |||| |||||| |||| ||||| |||||||||||||| | |||||||| | ||||||| |||||||| ||
gtatgaaacttgtgcaaattctgtgtatcttaatattagcaatttggatgtatgctcataatttaatttgtatttactt-----gtttaaaagCTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAAAACACCCTTATGTTGAACACAATCTTGATACTGTTGTCAGCATCATTAG

upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G11200.1 (Glycine max), 3'ss of exon 4
--gtattgcttgtgccagttaatcaatttttcattttacttcttttgtt-catactgaacttttatgctactttcactttttaaattaaaaagCCAAACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAAAGCACCCTTATGTTGAGCGCAATCTTGGTCCTGTTGTTAGCATCATAAG
   |    ||  ||  | ||       | || || |||    ||| | |  || || |   ||||   |   || ||||     ||| |||||| || ||||||||| | || || |||||| |||| |||||| |||| ||||| |||||||||||||| | |||||||| | ||||||| |||||||| ||
gtatgaaactcatgaaaattctgtgtatcttaatgttagcaatttggctgtatgctcagaatttaatttgtatttactt-----atttaaaagCTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAAAACACCCTTATGTTGAACACAATCTTGATACTGTTGTCAGCATCATTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161707863|gb|FC055659.1|FC055659
EST:     AAACTCTTCTTGAAATCG                         CC-AACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAA
genomic: AAACTCTTCTTGAAATCGgtattgcttg ... aattaaaaagCCAAACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcttttgttcatactgaacttttatgctactttcactttttaaattaaaaagCCAAACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAAAGCACCCTTATGTTGAGCGCAATCTTGGTCCTGTTGTTAGCATCATAAG
                              tactttcactttttaa  TA-rich tract