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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggcctgactaatcattgatgtatcgtttgacctctaattgtcaagaccacacatttctaattttgagtttacctcagTCTCTTCTAGAAGCCATGGAGCAACAGTGTGTCTCTGTTGCAAAGGCTGGACTTGTGGCAAGTTTATCAGCACGAACTTCTGTCTTAGCAGCGGCAAATC

Basic information

species Vitis vinifera
transcript Vv08s0040g03290.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os05g38850.1 (Oryza sativa), 3'ss of exon 9
-------gtttggcctgactaatcattgatgtatcgtttg---acctctaattgtcaagaccacacatttc-taattttgagtttacctcagTCTCTTCTAGAAGCCATGGAGCAACAGTGTGTCTCTGTTGCAAAGGCTGGACTTGTGGCAAGTTTATCAGCACGAACTTCTGTCTTAGCAGCGGCAAATC
         |||      ||   |  |||  | |   ||    | | ||||    | | | ||    | |  | | |||||||| |    || || | || |||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| || ||||||||  |||| || || ||||
gttttaaccttgtataagcttcactctgaaatgttaattagaaagccctaacctgccacatcatgtttctaatgaatttgagttcat---agGCTTTACTGGAAGCCATGGAGCAGCAATGTGTATCTGTGGCAAAGGCTGGCCTTGTGGCAAGTTTATCAGCCCGTACTTCTGTGCTAGCGGCTGCTAATC

upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G163658_T01 (Zea mays), 3'ss of exon 8
------------------gtttggcctga---ctaatcattgatgtatcgtttgacctctaattgtcaagaccacacatttctaattttga--gtttac----ctcagTCTCTTCTAGAAGCCATGGAGCAACAGTGTGTCTCTGTTGCAAAGGCTGGACTTGTGGCAAGTTTATCAGCACGAACTTCTGTCTTAGCAGCGGCAAATC
                     |    |||    |  ||||  |  | ||    |      | ||  || | | |   |||| |  || | |  ||||      ||||| || | || |||||||||||||| || ||||| ||| ||||||||||||| ||||| |||||||| ||||| |||||||| || || ||||| |||||||
gtattacaattatttttcaccttatatgaagctttctcatgaagttttcaccagtgaggaagttcccatgcctatctatttgtgtttctaattgtttctggttctcagGCTTTACTTGAAGCCATGGAGCAGCAATGTGTTTCTATTGCAAAGGCTGGTCTTGTAGCAAGTTTGTCAGCTCGAACTTCAGTGTTGGCAGCTGCAAATC

upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G36230.1 (Glycine max), 3'ss of exon 8
gtttggcct-----gactaatcattgatgtatcgtttgacctctaat---tgtcaagaccacac----atttctaattttgagtt----tacctcagTCTCTTCTAGAAGCCATGGAGCAACAGTGTGTCTCTGTTGCAAAGGCTGGACTTGTGGCAAGTTTATCAGCACGAACTTCTGTCTTAGCAGCGGCAAATC
|||||  ||     | ||    ||  || | | |||    || ||||   | | ||      ||    |    |||  |  | ||    ||   ||| || | || || || ||||||||||||||||||||| |||||||||| ||| | || |||||||||||| |  | |||||||||||||| || ||||| |
gtttgttctctggtgtctggcaatcaatttcttgttactactttaatatattttaaacttttacctgaaaccttaacgtgaaattgtaataatacagGCTTTACTCGAGGCGATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCGGCTGCAAACC

upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G09660.1 (Arabidopsis thaliana), 3'ss of exon 9
gtttggcctgactaatcattgatgtatcgtttgacctctaattgtca-agaccacacatttctaattttgagtttacctcagTCTCTTCTAGAAGCCATGGAGCAACAGTGTGTCTCTGTTGCAAAGGCTGGACTTGTGGCAAGTTTATCAGCACGAACTTCTGTCTTAGCAGCGGCAAATC
    |   |  || |||    ||||  | ||  || ||| ||  | | |     | |||| || |  |  | ||| |  ||| |  | |||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || ||| ||||||| |||||||||||  ||||||| |||||||
----gttttttcttatcggcaatgt--catt--acttctgatgttgacatttttctcattacttacatc-actttgcaacagGCGTTGCTAGAAGCAATGGAACAACAATGTGTCTCTGTTGCAAAGGCTGGGCTTGTAGCTAGTCTATCAGCTCGAACTTCTGTTATAGCAGCAGCAAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtttgacctctaattgtcaagaccacacatttctaattttgagtttacctcagTCTCTTCTAGAAGCCATGGAGCAACAGTGTGTCTCTGTTGCAAAGGCTGGACTTGTGGCAAGTTTATCAGCACGAACTTCTGTCTTAGCAGCGGCAAATC
                                ttctaat  putative branch site (score: 2)
                                             tttacctc  putative PPT
                            acatttctaatttt  TA-rich tract