Sequence
atgc intronic sequence ATGC exonic sequencegtgatcttaatttggacaattaattttgcacagctatgtcttatggtgatcttgattatgcaatatccaccacttacataaattcttagttgacatagaaatgaatctatcagGGACTCCCTCTAAAAGACTATGAGGCAAAGAAAGAACTTGTGGCAGATGAAATCATAAGCAGATTGGAAAAAAAACTATTTCCGGGGCTCAAATCATCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G10990.1 (Glycine max), 3'ss of exon 9
-------------------------------------------------gtgatcttaatttggacaattaat--tttgcacagctatgtcttatg---gtgatcttgattatgcaatatccaccacttacataaattcttagtt---gacatagaaatgaatc---tatcagGGACTCCCTCTAAAAGACTATGAGGCAAAGAAAGAACTTGTGGCAGATGAAATCATAAGCAGATTGGAAAAAAAACTATTTCCGGGGCTCAAATCATCCA
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gtaggcaatactgaataatgattactggtaaacaaagttgaagattttcacgttgcttgcttctatgacttatagttttttttgtttttctttttgcctgctgttttactcatttgcagattagtttatgcttaaaatctcaatatcaaatatgtcactgttttctgtgctagGGTCTTTCAAGAGCAGACTACGAGGCAAAGAAGCAGCTTGTAGCAGATGAAATCACAAGCAGATTAGAGAATAAATTGTTTCCAGGTCTTAGATCATCCA
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G34060.1 (Glycine max), 3'ss of exon 9
----------------------------------------gtgatcttaat-----ttggacaattaattttgcacagctatgtcttatgg---tgatcttgattatgcaatatccaccacttacataaattcttagt-tgacata-gaaatgaatctat----cagGGACTCCCTCTAAAAGACTATGAGGCAAAGAAAGAACTTGTGGCAGATGAAATCATAAGCAGATTGGAAAAAAAACTATTTCCGGGGCTCAAATCATCCA
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gtaggcaatactgaatactgagtacttataaacaaagttgaagattttcatgttgcttgcttctatgactttagattttttttttttttgcctcctgttttattcatttgcagattagtttatgcataaaatctcaatatcaaatatgtcattgttttatgtcctagGGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAAATCACAAGCAGATTAGAGAATAAATTGTTTCCTGGTCTTAGATCATCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110389204|gb|EC954024.1|EC954024EST: GTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAG GGGCTCCCTCTAAAAGACTATGAGGCAAAGAAGGAACTTGTGGCAGATGAA
genomic: GTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAGgtgatcttaa ... aatctatcagGGACTCCCTCTAAAAGACTATGAGGCAAAGAAAGAACTTGTGGCAGATGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaatatccaccacttacataaattcttagttgacatagaaatgaatctatcagGGACTCCCTCTAAAAGACTATGAGGCAAAGAAAGAACTTGTGGCAGATGAAATCATAAGCAGATTGGAAAAAAAACTATTTCCGGGGCTCAAATCATCCA
ttacataaattctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatcttaatttggacaattaattttgcacagctatgtcttatggtgatcttgattatgcaatatccaccacttacataaattcttagttgacatagaaatgaatctatcagGGACTCCCTCTAAAAGACTATGAGGCAAAGAAAGAACTTGTGGCAGATGAAATCATAAGCAGATTGGAAAAAAAACTATTTCCGGGGCTCAAATCATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT