Sequence
atgc intronic sequence ATGC exonic sequencegtctgccagacattgctttgatggtgatttctgggaattatttgctttatatatgctgcttacattaacatgtttcagattattgaacattgataattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATTGGTAAATTTTATAGTGGAGATTGCTACATTGTTCTTTATACCTACCACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G32100.1 (Glycine max), 3'ss of exon 8
gtctgccagacattgctttgatggtgatttctgggaattatttgctttatatatgctgcttacattaacatgtttcagattattgaacattgat--aattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATTGGTAAATTTTATAGTGGAGATTGCTACATTGTTCTTTATACCTACCACT
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---------gtagagttataatttt--ctttataaactttcctactcccttagcattattta-atttacac-ctgcaaac-acttaatattatttgaaatttttagGTATGGCGAATCAATGGAAATGCCAAGACTGCATTGCCGAAGGAGGAGATTGGTAAATTTTATAGTGGAGATTGCTACATTGTATTGTACACCTACCATT
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 9
gtctgccagacattgctttgatggtgatttctgggaattatt-tgctttatatatgctgcttacattaacatgtttcagattattgaacattgat--aattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATTGGTAAATTTTATAGTGGAGATTGCTACATTGTTCTTTATACCTACCACT
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------------gtggggttataattttctttataaactttcctacttcccttagcattatttaatttacacctgtaaa--cacttaatattatttgaaatttgtagGTATGGCGAATCAATGGAAATGCCAAGAATGCATTGCCAAAGGAGGAGATCGGTAAATTTTATAGTGGAGATTGTTACATTGTACTGTACACCTACCACT
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 10
gtctgccagacattgctttgatggtgatttctgggaattatttgct--ttatatatgctgcttacattaacatgtttcagattattgaacattgataattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATTGGTAAATTTTATAGTGGAGATTGCTACATTGTTCTTTATACCTACCACT
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-----------------------gtgattttgtaatttttttagttagtttcttacctcgattaaattatgccagctaacattaatgttatttgata--tttccagGTATGGCAAATCAGTGGAAGTGCTAAGACTCCCTTATCTAAGGAGGATATTGGTAAATTTTATAGTGGAGATTGTTACATAGTACTGTACACTTATCACT
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 9
gtctgccagacattgctttgatggtgatttctgggaattatttgctttatatatgctgcttacattaacatgtttcagattattgaacattgataattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATTGGTAAATTTTATAGTGGAGATTGCTACATTGTTCTTTATACCTACCACT
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------------gtgattttataatttttttaattagtttcttggctcaattaagttatgccagctaacat---taatgttatttggcactta--------cagGTATGGCAAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAGGATATCGGTAAATTTTATAGTGGAGATTGTTACATAGTACTGTACACTTATCACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30133877|gb|CB919216.1|CB919216EST: CTGTAAATGAGGAAGTCCCACCTTTGCTTGAAGCAGGTGGAAAAATTGAG GTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATT
genomic: CTGTAAATGAGGAAGTCCCACCTTTGCTTGAAGCAGGTGGAAAAATTGAGgtctgccaga ... aattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATT
EST:
gi|71854972|gb|DT004027.1|DT004027EST: CTGTAAATGAGGAAGTCCCACCTTTGCTTGAAGCAGGTGGAAAAATTGAG GTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATT
genomic: CTGTAAATGAGGAAGTCCCACCTTTGCTTGAAGCAGGTGGAAAAATTGAGgtctgccaga ... aattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatatgctgcttacattaacatgtttcagattattgaacattgataattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATTGGTAAATTTTATAGTGGAGATTGCTACATTGTTCTTTATACCTACCACT
ttttcc CT-rich tract
attattgaacattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgccagacattgctttgatggtgatttctgggaattatttgctttatatatgctgcttacattaacatgtttcagattattgaacattgataattttccagGTTTGGCGTATCAATGGCAGTGCCAAGACTCCAGTGCTGAAAGAAGATATTGGTAAATTTTATAGTGGAGATTGCTACATTGTTCTTTATACCTACCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT