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...aaggttgtatgagcaaataatttatccaattctgctttgcattataccttgcgtcagtttccccttgtgattgacatgctgtttgattttaaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG
species | Vitis vinifera |
transcript | Vv08s0007g08110.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACGAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAGEST: gi|110695893|gb|EE074430.1|EE074430
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110410507|gb|EC976190.1|EC976190
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110358248|gb|EC922324.1|EC922324
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTTTCGCCAAG GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110427310|gb|EC993745.1|EC993745
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|30252653|gb|CB970204.1|CB970204
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACGAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110703094|gb|EE079637.1|EE079637
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCGTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110688154|gb|EE066378.1|EE066378
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110696827|gb|EE073281.1|EE073281
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110730631|gb|EE107931.1|EE107931
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCGTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|83275755|gb|DV939763.1|DV939763
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGATGAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110373043|gb|EC937250.1|EC937250
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACGAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110378825|gb|EC943977.1|EC943977
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACGAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAAEST: gi|110708022|gb|EE085087.1|EE085087
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAA GACGCGTTATTGGACAAACATAAEST: gi|110388620|gb|EC953390.1|EC953390
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAA
EST: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAG GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
genomic: AAACAGATGATGCTGCAGCACAATGGTGTAGAGATGTATTTGTCGCCAAGgtgtatacca ... aaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAA
accttgcgtcagtttccccttgtgattgacatgctgtttgattttaaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG
ttttaac putative branch site (score: 2)
tttgattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggttgtatgagcaaataatttatccaattctgctttgcattataccttgcgtcagtttccccttgtgattgacatgctgtttgattttaaccaaccagGACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - -caaataa
- - - - - - - - - - - - -ccaattc
- - - - - - - - - - - - - - - - tgctttg
- - - - - - - - - - - - - - - - - - - - - - -accttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct