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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttattgtttatcattgcatggctttaagtgattaagattgatcaaatgggcagaagggacaaggcattgagatttgtattaataaatgatgtttgctttgcgtggcttgtgatggttgtgacactgtgttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAGCAACAGAGGAGAAGGTTGGACCCCTCAACAAATGAACCTTTATTTACAC

Basic information

species Vitis vinifera
transcript Vv08s0007g07020.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808434|gb|FQ405578.1|FQ405578
EST:     CTCTTGGAATTTTGCGCCCTGCCAACAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTAACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGCTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351051864|gb|FQ455278.1|FQ455278
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAGGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351052763|gb|FQ456490.1|FQ456490
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|71875321|gb|DT024376.1|DT024376
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|77581062|gb|DV219456.1|DV219456
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351048297|gb|FQ449389.1|FQ449389
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCATTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|349810776|gb|FQ403019.1|FQ403019
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAGGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|34416299|gb|CF415053.1|CF415053
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351037882|gb|FQ465120.1|FQ465120
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351054602|gb|FQ456799.1|FQ456799
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|349813262|gb|FQ411502.1|FQ411502
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAGGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351016092|gb|FQ432047.1|FQ432047
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351039176|gb|FQ457851.1|FQ457851
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351048422|gb|FQ448696.1|FQ448696
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|77585060|gb|DV221616.1|DV221616
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|351047379|gb|FQ451891.1|FQ451891
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|77583147|gb|DV220609.1|DV220609
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
EST: gi|349815100|gb|FQ410323.1|FQ410323
EST:     CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTG                         GTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG
genomic: CTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttat ... gttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaacttattgtttatcattgcatggctttaagtgattaagattgatcaaatgggcagaagggacaaggcattgagatttgtattaataaatgatgtttgctttgcgtggcttgtgatggttgtgacactgtgttgttacagGTAAGTGCTTACTCATCCTTTGCAAGAATGGGGGTTGGCATTGGTTTGGAGCAACAGAGGAGAAGGTTGGACCCCTCAACAAATGAACCTTTATTTACAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA