Sequence
atgc intronic sequence ATGC exonic sequence...ttttttccaccatgggataatggtgttctatttgcttctccacatccaacctttatgttcatttttagatgtcttaatggagttcactcacctgtaacagGAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACAACAGATTAAAATTGCTATTGTTGAAGCAATGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G42310.1 (Glycine max), 3'ss of exon 12
-ttttttccaccatgggataatggtgttctatttgcttctccacatccaacctttatgttcatttttagatgtcttaatggagttcactc---acctgtaacagGAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACAACAGATTAAAATTGCTATTGTTGAAGCAATGGAT
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atcctttcttgtataatataaacat-ttgaaattacagattgataacaatattct---cttgggaatagaagctaaatagaatttcattttgttttttcaatagGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGAT
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G42300.1 (Glycine max), 3'ss of exon 8
-ttttttccaccatgggataatggtgttctatttgcttctccacatccaacctttatgttcatttttagatgtcttaatggagtt-cactc---acctgtaacagGAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACAACAGATTAAAATTGCTATTGTTGAAGCAATGGAT
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atcctttcttgtataatataaacat-ttgaaattaaagattgataacaatattct---cttgggaataga-acctaaatagaatttcattttgtattttaaatagGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGAT
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G42280.1 (Glycine max), 3'ss of exon 8
-ttttttccaccatgggataatggtgttctatttgcttctccacatccaacctttatgttcatttttagatgtcttaatggagtt-cactc---acctgtaacagGAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACAACAGATTAAAATTGCTATTGTTGAAGCAATGGAT
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atcctttcttgtataatataaacat-ttgaaattacagattgataacaatattct---cttgggaataga-acctaaatagaatttcattttgtattttaaatagGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGAT
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G42310.2 (Glycine max), 3'ss of exon 8
-ttttttccaccatgggataatggtgttctatttgcttctccacatccaacctttatgttcatttttagatgtcttaatggagttcact---cacctgtaacagGAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACAACAGATTAAAATTGCTATTGTTGAAGCAATGGAT
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atcctttcttgtataatataaacat-ttgaaattacagattgataacaatattct---cttgggaatagaagctaaatagaatttcattttgttttttcaatagGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGA-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689389|gb|EC938332.1|EC938332EST: TAACTGCTGGAGAACTCTGCAGGCTTCAAGTTGCAGATGGGATCATCCCT GAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACA
genomic: TAACTGCTGGAGAACTCTGCAGGCTTCAAGTTGCAGATGGGATCATCCCTgtaatattct ... cctgtaacagGAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccaacctttatgttcatttttagatgtcttaatggagttcactcacctgtaacagGAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACAACAGATTAAAATTGCTATTGTTGAAGCAATGGAT
cactcac putative branch site (score: 2)
ctcacct CT-rich tract
tttatgttcattttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttttccaccatgggataatggtgttctatttgcttctccacatccaacctttatgttcatttttagatgtcttaatggagttcactcacctgtaacagGAGCCACTTGGGGGTGCACATGCAGATCCATCTTGGAGCTCACAACAGATTAAAATTGCTATTGTTGAAGCAATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - ttccacc
- - - - - - - - - - tggtgtt
- - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - -acatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcactca