1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtaatctttaaatacatgcttcatgtgttctttacaggataggaattatccaagcatcatatatgttcccctactgattatatgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAAAATGCAGACTGAGCATTCAGAAGTGTAGTCCTGCCCAGATTGAAATTC
species | Vitis vinifera |
transcript | Vv08s0007g00290.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG ATTCAACATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAEST: gi|32267540|gb|CD716503.1|CD716503
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG ATTCAACATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAEST: gi|30321805|gb|CD005067.1|CD005067
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG ATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAEST: gi|27581176|gb|CB003871.1|CB003871
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG ATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAEST: gi|27581112|gb|CB003807.1|CB003807
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG ATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAEST: gi|27579922|gb|CB002617.1|CB002617
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG ATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAEST: gi|32269551|gb|CD718710.1|CD718710
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
EST: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG ATTCAACATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
genomic: ACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAGgtaagtaatc ... tgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCA
gataggaattatccaagcatcatatatgttcccctactgattatatgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAAAATGCAGACTGAGCATTCAGAAGTGTAGTCCTGCCCAGATTGAAATTC
tactgat putative branch site (score: 2)
ttttc putative PPT
tgattatatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaatctttaaatacatgcttcatgtgttctttacaggataggaattatccaagcatcatatatgttcccctactgattatatgattttcagATTCAATATGTTTTGATACCAGCTGAATCAGATCCTTCTGGCAAATGGGCAAAATGCAGACTGAGCATTCAGAAGTGTAGTCCTGCCCAGATTGAAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT