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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctgaattgtgattgctgtaatatggaaccctctccaacattgtagctaatgcctagtttttgcagCAAACTAACTCGGATTCTTAAAGATGGTCTGAGTGGAAATTCTCAAACAGTCATGATTGCCACAATTGCACCTGCGGATAATCAATATCATCACACAATT

Basic information

species Vitis vinifera
transcript Vv07s0205g00140.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM5G837018_T01 (Zea mays), 3'ss of exon 9
--gtatctgaattgt-gattgctgtaatatggaaccctctccaacatt-------gtagctaatgcctagtttttgcagCAAACTAACTCGGATTCTTAAAGATGGTCTGAGTGGAAATTCTCAAACAGTCATGATTGCCACAATTGCACCTGCGGATAATCAATATCATCACACAATT
   | ||| || | |  |||    |||||||  ||  | |   |  |        |||||||||  |     ||||||| ||| ||||||| |||||||| ||||| ||   ||| ||||||| ||| || ||| |||| |||||  |||| || ||| |||| |||||||||||||  
gtatgtctcaagtatcaattttactaatatgtgacttttttttatttatctactagtagctaatagcagccatttgcagTAAATTAACTCGTATTCTTAAGGATGGGCTCTCTGGCAATTCTCGAACCGTTATGGTTGCTACAATATCACCAGCTGATGATCAGTATCATCACACAACG

upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G49650.1 (Arabidopsis thaliana), 3'ss of exon 8
----gtatctgaattgtgattgctgtaatatggaaccctctccaacattgtagctaatgccta---gtttttgcagCAAACTAACTCGGATTCTTAAAGATGGTCTGAGTGGAAATTCTCAAACAGTCATGATTGCCACAATTGCACCTGCGGATAATCAATATCATCACACAATT
    || || ||  ||||||   | | || |  |          |  || | ||| |  |  |    |  || ||||||||| || |||||||| ||||||||||||||||| || || || ||||| ||| |||| || ||  ||||||| |||| ||| |||||||| ||  | 
gtacgtgtc-gatatgtgatctttcttatcttaagatggtcattatttt-tggcttacacacatgtataatttcagCAAACTTACGCGGATTCTCAAAGATGGTCTGAGTGGGAACTCCCAGACAGTGATGGTTGCAACTATATCACCTGCTGATAGTCAGTATCATCATACTGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgctgtaatatggaaccctctccaacattgtagctaatgcctagtttttgcagCAAACTAACTCGGATTCTTAAAGATGGTCTGAGTGGAAATTCTCAAACAGTCATGATTGCCACAATTGCACCTGCGGATAATCAATATCATCACACAATT
                                 agctaat  putative branch site (score: 3)
                                              tttttgc  putative PPT
     tgtaatat  TA-rich tract