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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgtgcaccatttcataatcaagtgttatctgaactaagagaaacttggctgcaccttttattttaaagcttataagatgatttcctttatgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTGGACTATTTTCTCTGAAGCTACAAATATTTCACGATTATTAAGTGTTAGT

Basic information

species Vitis vinifera
transcript Vv07s0151g00350.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351053929|gb|FQ441695.1|FQ441695
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|352794086|gb|FQ479328.1|FQ479328
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|351036041|gb|FQ463886.1|FQ463886
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|352794210|gb|FQ479452.1|FQ479452
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|351046353|gb|FQ452969.1|FQ452969
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|352794331|gb|FQ481562.1|FQ481562
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|352794414|gb|FQ481645.1|FQ481645
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|110729354|gb|EE105534.1|EE105534
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|351047787|gb|FQ459007.1|FQ459007
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAACATATGCTGTGTCCTCCGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
EST: gi|349807444|gb|FQ401401.1|FQ401401
EST:     GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAG                         TGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG
genomic: GCAATACTAGCTGAGCTTTTCACTTTGTGCCCAATTTTCCCTGGTGAAAGgtgattatac ... atgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggctgcaccttttattttaaagcttataagatgatttcctttatgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTGGACTATTTTCTCTGAAGCTACAAATATTTCACGATTATTAAGTGTTAGT
                                     tttcctttat  CT-rich tract
            ttttattttaaagctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catgtgcaccatttcataatcaagtgttatctgaactaagagaaacttggctgcaccttttattttaaagcttataagatgatttcctttatgtgggcagTGAAATAGATCAACTATACAAGATATGCTGTGTCCTCGGCACTCCAGATTGGACTATTTTCTCTGAAGCTACAAATATTTCACGATTATTAAGTGTTAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
catgtgc
- - - - ccatttc
- - - - - - - - - - caagtgt
- - - - - - - - - - - - - - - - - - - -gagaaac
- - - - - - - - - - - - - - - - - - - - - - - -tggctgc