1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctatatctttatcttcattttgatccattaccctagtttaacctgcaattgttcatgaattgtatggattgaatatgattcttgctcaaatttgtttcagGGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG
species | Vitis vinifera |
transcript | Vv07s0141g00390.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGCTCTCCACCTGAG GGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTCEST: gi|110380596|gb|EC945872.1|EC945872
genomic: CAGCTCTCCACCCGAGgtttgtgtca ... tttgtttcagGGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTC
EST: TCACAATGAGGACTCCTACCCGGAAGATTCGAAACAGCTCTCCACCTGAG GGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTCEST: gi|352764472|gb|FQ472829.1|FQ472829
genomic: TCACAATGAGGACTCCTACTCGGAAGATTCGAAACAGCTCTCCACCCGAGgtttgtgtca ... tttgtttcagGGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTC
EST: TCACAATGAGGACTCCTACTCGGAAGATTCGAAACAGCTCTCCACCCGAG GGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTCEST: gi|30300982|gb|CB977776.1|CB977776
genomic: TCACAATGAGGACTCCTACTCGGAAGATTCGAAACAGCTCTCCACCCGAGgtttgtgtca ... tttgtttcagGGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTC
EST: CACAATGAGGACTCCTACCCGGAAGATTCGAAACAGCTCTCC-CCCTGAG GGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATNTCTTEST: gi|30300914|gb|CB977708.1|CB977708
genomic: CACAATGAGGACTCCTACTCGGAAGATTCGAAACAGCTCTCCACCC-GAGgtttgtgtca ... tttgtttcagGGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTT
EST: TCACAATGAGGACTCCTACCCGGAAGATTCGAAACAGCTCTCCACCTGAG GGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTC
genomic: TCACAATGAGGACTCCTACTCGGAAGATTCGAAACAGCTCTCCACCCGAGgtttgtgtca ... tttgtttcagGGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTC
caattgttcatgaattgtatggattgaatatgattcttgctcaaatttgtttcagGGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG
tttgtttc CT-rich tract
aaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatatctttatcttcattttgatccattaccctagtttaacctgcaattgttcatgaattgtatggattgaatatgattcttgctcaaatttgtttcagGGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG
- - - - - - - - - - - - ccattac
- - - - - - - - - - - - - - - - - - - - -cctgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgg