1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtttacatagaataggggctgtgttcattatgtttatttgtttctatttcattggcttccaaggccagttctgaagtaaccatcatccatgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCGCATCATAGAGTGAATCTCAGATACCATAAAAAAGGATGGTACCTTCTT
species | Vitis vinifera |
transcript | Vv07s0129g00270.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|110362193|gb|EC925709.1|EC925709
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCACEST: gi|110421395|gb|EC987691.1|EC987691
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|77589632|gb|DV224103.1|DV224103
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|33407730|gb|CF213357.1|CF213357
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAGAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|110396473|gb|EC962161.1|EC962161
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|33402954|gb|CF208581.1|CF208581
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAGGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|352768206|gb|FQ467345.1|FQ467345
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|110703855|gb|EE081076.1|EE081076
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|34542441|gb|CF510673.1|CF510673
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|110408496|gb|EC974132.1|EC974132
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: GAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|352789701|gb|FQ476299.1|FQ476299
genomic: GAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCGACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|33403041|gb|CF208668.1|CF208668
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAGGCAATG GCCCATCCTTATTTTTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|32245754|gb|CD711573.1|CD711573
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: ATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|34542531|gb|CF510763.1|CF510763
genomic: ATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|352777179|gb|FQ474486.1|FQ474486
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|32246381|gb|CD712200.1|CD712200
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|71882713|gb|DT031768.1|DT031768
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|71883672|gb|DT032727.1|DT032727
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCEST: gi|110415099|gb|EC980973.1|EC980973
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
EST: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATG GCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
genomic: AGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGgtaaaacccc ... tgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGC
tatttcattggcttccaaggccagttctgaagtaaccatcatccatgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCGCATCATAGAGTGAATCTCAGATACCATAAAAAAGGATGGTACCTTCTT
aagtaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttacatagaataggggctgtgttcattatgtttatttgtttctatttcattggcttccaaggccagttctgaagtaaccatcatccatgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCGCATCATAGAGTGAATCTCAGATACCATAAAAAAGGATGGTACCTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - gggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatcca