Sequence
atgc intronic sequence ATGC exonic sequencegtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcagGCATACTTTTGCAACGTTATCTTTTGTTTCTGAGATTTTTATCTTCCTGTATGTTGGTATTGATGCCTTGGACATTGAGAAGTGGCGGGTTGTAAGCAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 9
gtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcagGCATACTTTTGCAACGTTATCTTTTGTTTCTGAGATTTTTATCTTCCTGTATGTTGGTATTGATGCCTTGGACATTGAGAAGTGGCGGGTTGTAAGCAAC
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---------------gtaaattataattctcattccatattctactgtttaatgattagcttcagttcgtagaaaaactaaacaaaacttactggtttgttttgtcctt--tcacctcagGCACGCATTTGCAACTCTGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTGAAAAATGGGAGTTTGCCAGTGAC
upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 10
gtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcagGCATACTTTTGCAACGTTATCTTTTGTTTCTGAGATTTTTATCTTCCTGTATGTTGGTATTGATGCCTTGGACATTGAGAAGTGGCGGGTTGTAAGCAAC
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-----------------gtatgtcttttctggattcag--tttttctagcaaaaattatggttcttacttcttaca-ttatgt-atac-taattgctgattttctctttccatgttgcagGCATACTTTTGCAACTTTATCATTCATTGCAGAAATTTTCCTTTTCCTCTATGTTGGGATGGATGCATTGGACATTGAGAAGTGGAAATTAGCTAGTAGC
upper sequence: Vv07s0104g01280.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G027851_T03 (Zea mays), 3'ss of exon 7
gtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattat-tttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcagGCATACTTTTGCAACGTTATCTTTTGTTTCTGAGATTTTTATCTTCCTGTATGTTGGTATTGATGCCTTGGACATTGAGAAGTGGCGGGTTGTAAGCAAC
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-------------------gtaattattc----cttgtcattttttcgctagtaatgtttctgttctgcttaataaacgaatgctgactgaattccttttgggcctttttcattcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCCCTCGACATCGAGAAGTGGGAGTTTGCCAGTGAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcagGCATACTTTTGCAACGTTATCTTTTGTTTCTGAGATTTTTATCTTCCTGTATGTTGGTATTGATGCCTTGGACATTGAGAAGTGGCGGGTTGTAAGCAAC
tttttgc CT-rich tract
aaaaaaattatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcagGCATACTTTTGCAACGTTATCTTTTGTTTCTGAGATTTTTATCTTCCTGTATGTTGGTATTGATGCCTTGGACATTGAGAAGTGGCGGGTTGTAAGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA