Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccatgaacccttctgccactttttctctatcctattctaccccaagtttttctcaggtgaggttatctctacttaatgacgctaacttgataattctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGAGATTGTAATTGGCACCCTAATTATCCAATCCTGGTTAGCTCTTCATGGG

Basic information

species Vitis vinifera
transcript Vv07s0104g00900.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g00900.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G17000.1 (Glycine max), 3'ss of exon 13
gtatgccatgaacccttctgccactttttctctatcctattctaccccaagtttttctca----ggtgaggttatctctacttaatgacgctaactt-gataattctct-ttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGAGATTGTAATTGGCACCCTAATTATCCAATCCTGGTTAGCTCTTCATGGG
               | |||    ||| | |  |    |    |    ||        ||    | | | |||   |||  ||  ||| | |||||| |||||||| |      || |||  ||||| ||||||||||||||| ||||||||||||||    | |||||||||| |||||||||     || | |  || ||||||||||| ||||
--------------gtgctgtttgtttatttgaaaagaaaagaaaaaaaaaaacacaacaaaaagttcaagttggttctcttt--tgatggtaacttcgataattcaccaccacagGTGAGTGGAGCTCAAGTTGCAACACTGAAGCACCATAAATCACCTTTGAGAGATTGTAGTTGGCACCCCTTCCATACTACGCTTGTTAGCTCTTCTTGGG

upper sequence: Vv07s0104g00900.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G02800.1 (Glycine max), 3'ss of exon 9
gtatgccatgaacccttctgccactttttctctatcctattctaccccaagtttttctcaggtgaggttatctctacttaatgacgctaactt-gataattctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGAGATTGTAATTGGCACCCTAATTATCCAATCCTGGTTAGCTCTTCATGGG
      || |||   ||         ||| | |||   |    |    ||    |    || | | |||   |||  ||  ||| | |||||| ||||| || ||    || | |  ||||| ||||| ||||| ||| ||||||||||||||   |||||||||||||  ||||||||     |  | |  || ||||||||||| ||||
----atcaggaaattttgcagttagatttgtttatttgaaaaaaa---aaacaataaaaagttcaagttggttctcttt--tgatggtaactttgataactcact--acagGTAAGTGGAGCTCAAGTCGCAACGCTGAAGCACCATAAATCACCTGTAAGAGATTGTAGCTGGCACCCCTTCCACACTACACTTGTTAGCTCTTCTTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131951|gb|CB917290.1|CB917290
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|352778369|gb|FQ465679.1|FQ465679
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAATTCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|110383437|gb|EC947810.1|EC947810
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|27579975|gb|CB002670.1|CB002670
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTA
EST: gi|352778075|gb|FQ467128.1|FQ467128
EST:     AATACATCTACTCTGGATCTAGGGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|34542793|gb|CF511025.1|CF511025
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|30328821|gb|CD012083.1|CD012083
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|110382432|gb|EC939539.1|EC939539
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|352781787|gb|FQ469085.1|FQ469085
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|37183856|gb|CF603210.1|CF603210
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|352769756|gb|FQ468684.1|FQ468684
EST:     AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
EST: gi|34542877|gb|CF511109.1|CF511109
EST:     AATACATTTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG                         CTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA
genomic: AATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTGgtatgccatg ... ctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaggtgaggttatctctacttaatgacgctaacttgataattctctttgtagCTGACCGGAGCCCAAGTTGCAACACTGGAGCACCATAAATCAGTCGTAAGAGATTGTAATTGGCACCCTAATTATCCAATCCTGGTTAGCTCTTCATGGG
                                           ttctctttgt  CT-rich tract
                                    ttgataatt  TA-rich tract