1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggtcaaaattaaatttgctaatgttttatgaaatgcatttatgagagtaacatccaaaaaaaacaatgttggtagatgagctggtgactttctttgtcagGTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTATTTCCCCGAGCTTCATTGAGGGGCTAACCTTGGAGGGACCTATTGGCCAT
species | Vitis vinifera |
transcript | Vv07s0031g02690.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG GTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTATEST: gi|32458384|gb|CD799558.1|CD799558
genomic: GGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAGgttggaaact ... tctttgtcagGTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTAT
EST: GGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG GTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTATEST: gi|110428612|gb|EC995089.1|EC995089
genomic: GGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAGgttggaaact ... tctttgtcagGTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTAT
EST: GGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG GTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTAT
genomic: GGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAGgttggaaact ... tctttgtcagGTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTAT
agtaacatccaaaaaaaacaatgttggtagatgagctggtgactttctttgtcagGTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTATTTCCCCGAGCTTCATTGAGGGGCTAACCTTGGAGGGACCTATTGGCCAT
gagtaac putative branch site (score: 2)
ctttctttgtc putative PPT
aaaaaaaacaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcaaaattaaatttgctaatgttttatgaaatgcatttatgagagtaacatccaaaaaaaacaatgttggtagatgagctggtgactttctttgtcagGTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTATTTCCCCGAGCTTCATTGAGGGGCTAACCTTGGAGGGACCTATTGGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - -aaattaa
- - - - - - - - gctaatg
- - - - - - - - - - - - - - - -aatgcat
- - - - - - - - - - - - - - - - - - - - - - - - -acatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagctgg