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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccactctttccaaaacaaaagaaaaaaaaaaaaaaatcatttccaagtaaataattttgtgtttccaaattgaaacaaacttctttattgcttaacaaaatattttgcccctttcagGATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG

Basic information

species Vitis vinifera
transcript Vv07s0031g02240.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G32920.1 (Glycine max), 3'ss of exon 5
gtaagccactctttccaaaacaaaagaaaaaaaaaaaaaaatcatttccaagtaaataattttgtgtttccaaattgaaacaaacttctttattgcttaacaaaatattttgcccctttcagGATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG
|| ||| ||| ||| |  |   ||     |   ||   | |  |||    |||  |  |||  ||      |||    ||||   ||  ||| | || || |||            || |||||||||| || ||||||||||||||| |||||||  | |||
gtgagcaactattttcgtagtgaagtcctatggaattcaca--attcttcagttgaatattcagt-----taaagaataacag--ttggttaatcctgaataaa-----------tttccagGATGGCATGCTATGTTTTGGGCATCCTTAATTCCTGTTGTG

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G21510.1 (Glycine max), 3'ss of exon 9
gtaagccactctttccaaaacaaaagaaaaaaaaaaaaaaatcatttccaagtaaataattttgtgtttccaaattgaaacaaacttctttattgcttaacaaaatattttgcccctttcagGATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG
|| ||| |||  || |  |   ||     |   ||   | ||   ||              ||| || | ||  |  | |  |||       ||| ||||     |||        || |||||||||| || ||||||||||||||| |||||||  | |||
gtgagcaactactttcttagtgaagtcctatggaattcacatttctttgg-----------ttgagtattcagttaaagaataaca-----gttggttaatcttgtatgaa----tttccagGATGGCATGCTATGTTTTGGGCATCCTTAATTCCTGTTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688552|gb|EC920354.1|EC920354
EST:     TCCTGTGTTATGGGCATCGTTTGTGATTTTCTTGCTCCTAAATGTTAGCG                         GATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG
genomic: TCCTGTGTTATGGGCATCGTTTGTGATTTTCTTGCTCCTAAATGTTAGCGgtaagccact ... cccctttcagGATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccaaattgaaacaaacttctttattgcttaacaaaatattttgcccctttcagGATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG
                           gcttaac  putative branch site (score: 3)
                                      tattttgcccctttc  putative PPT
                     tttattgcttaacaaa  TA-rich tract