Sequence
atgc intronic sequence ATGC exonic sequencegtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtttttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G32100.1 (Glycine max), 3'ss of exon 9
gtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtttttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
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------------------------------------------------------gtaagtatcaattc--acttttattttggttc--agcttcagatgatgttccattgaccttaaataacttg--tttttgtaatgatattaaatatgtg-aagGTGCGGGCATCAGCAATTATCACAAATGCACCGTATCTTCTGAATGTTGATTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 9
gtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtttttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
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------------------------------------------------------gtaagcatcaattcactttattattttggt-tcaggttcagctgattttcca-ttgaccttaaataacttg--tttttgtaatgatattaaatatgtg-aagGTACGGGCTTCAGCAATTATCACTAATGCACCCTATCTTCTGAATGTTGATTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT2G21770.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtttttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
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----------------------------------------gttaggatctgttccttttcatttttctctcttttgatt----tcccaaatttcg-----taaa--------actaaactcattaacctctcttg------------------aagATCCGGGTATCTGCTGTTCTCTCAAATGCTCCTTACCTTCTTAATGTGGACTGTGATCATTACATCAACAACAGCAAGGCAATTAGAGAAGCTATGTGTT
upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtttttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
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-------------------------------------gtaaatgatatactttttaaagctctaaaccttcttctttgtaaattacgtcttgccatttattgaaa---tggttcctgactc-ttgatttcatctacaaaacttttg----ttgaagATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGATTGTGATCACTACATCAACAATAGCAAAGCTCTTAGAGAAGCAATGTGTT
upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G09870.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtttttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaat---atccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
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-----------------------------------------------gtaaataattatgctcaactctc-----cagtgtattctttgaatt-gatttatgtttatctctcgctaacttcctgactctttcttctcatgttaccgtatataattgaagATACGAGTCTCTGGAGTTCTATCAAATGCTCCTTATCTTCTAAATGTCGATTGTGATCACTACATCAATAATAGCAAAGCTCTTAGAGAAGCAATGTGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
tgtttttatgaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtttttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC