1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attctattcaaactgttggatcatgcctgtttctattattattctcatgtgtattcatgactgaacaatgtatctctttacactctgcttaaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACTGGACAGTCGTCACAGAAGATGGAAGCCTCTCAGCACAGTTCGAGCACAC
species | Vitis vinifera |
transcript | Vv07s0031g00820.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG AACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACTEST: gi|34546470|gb|CF514702.1|CF514702
genomic: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTGgtaatgcatt ... aaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACT
EST: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG AACCGATGCTGACAATCGGTAGCATTAACCCTATAATGTGGGATGACAACTEST: gi|110381974|gb|EC938149.1|EC938149
genomic: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTGgtaatgcatt ... aaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACT
EST: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG AACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACTEST: gi|110408483|gb|EC974119.1|EC974119
genomic: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTGgtaatgcatt ... aaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACT
EST: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG AACCGATGCTGACAATCGGTAGCATTAACCCTATAATGTGGGATGACAACTEST: gi|110422758|gb|EC989088.1|EC989088
genomic: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTGgtaatgcatt ... aaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACT
EST: AGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG AACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACTEST: gi|110429644|gb|EC996143.1|EC996143
genomic: AGGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTGgtaatgcatt ... aaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACT
EST: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG AACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACTEST: gi|33405491|gb|CF211118.1|CF211118
genomic: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTGgtaatgcatt ... aaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACT
EST: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG AACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACTEST: gi|110387367|gb|EC952027.1|EC952027
genomic: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTGgtaatgcatt ... aaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACT
EST: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTG AACCGATGCTGACAATCGGTAGCATTAACCCTATAATGTGGGATGACAACT
genomic: GGAACAATGATGGTGGACACATGGTGTTGAATCAAACCTTCACTATTGgtaatgcatt ... aaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACT
catgtgtattcatgactgaacaatgtatctctttacactctgcttaaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACTGGACAGTCGTCACAGAAGATGGAAGCCTCTCAGCACAGTTCGAGCACAC
ttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctattcaaactgttggatcatgcctgtttctattattattctcatgtgtattcatgactgaacaatgtatctctttacactctgcttaaatttgcagAACCGATGCTGACAATCGGTAGCATTAATCCTATAATGTGGGATGACAACTGGACAGTCGTCACAGAAGATGGAAGCCTCTCAGCACAGTTCGAGCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - -tcaaact
- - - - - - - - - - tcatgcc
- - - - - - - - - - - - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgta