Sequence
atgc intronic sequence ATGC exonic sequencegtatgcttcagaccccttgccaatttttcttttgcattcaagtcttttataattcattctatgcaatgctcattttgtccatccaatgcttattctacttgtacagTTTTGGTACAGTACTTGTTTCCCGAGCGATTAGAGCTGCTCATTGTTTGACTTCAATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G32620.2 (Glycine max), 3'ss of exon 9
----gtatgcttcagaccccttg-ccaatttttcttttgcattcaagtcttttataattcattctatgcaatgctcattttgtccatccaatgcttattctacttgtacagTTTTGGTACAGTACTTGTTTCCCGAGCGATTAGAGCTGCTCATTGTTTGACTTCAATTCAG
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gtaaggatcatttaactattacggccaatcattgattt--attcacacactt---aggtcagtccattaaattttaaaatgaaaattttcgtg--tatttttgttgaacagATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G35370.3 (Glycine max), 3'ss of exon 9
gtatgcttcagaccccttgccaatttttcttttgcattcaagtcttt-----tataattcattctatgcaatgctcattttgtccatccaatgcttattctacttgtacagTTTTGGTACAGTACTTGTTTCCCGAGCGATTAGAGCTGCTCATTGTTTGACTTCAATTCAG
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-----gtaaggattatttacctattgctgccaatcattgattttttcacacacttaggtcagtccattaaatttcaaaatgaaaattttcatg--tatttttgttgaacagATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G43930.3 (Arabidopsis thaliana), 3'ss of exon 9
gtatgcttcagaccccttgccaatttttcttttgcattcaagtcttttataattcattctatgcaatgctcattttgtccatccaatgcttat-tctacttgtacagTTTTGGTACAGTACTTGTTTCCCGAGCGATTAGAGCTGCTCATTGTTTGACTTCAATTCAG
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-------gtaactgtcacgtcgaatatctcatcgtgctaa----ttctaccatct------tgaaatgcacat-----ccctcatgtgtttttgtctatgaatacagTTTTGGTTCAGTACTTGTGTCACGGGCAATTAGAGCTGCACATTGCTTGACCTCTATCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcattctatgcaatgctcattttgtccatccaatgcttattctacttgtacagTTTTGGTACAGTACTTGTTTCCCGAGCGATTAGAGCTGCTCATTGTTTGACTTCAATTCAG
ttctactt CT-rich tract
ttattcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcttcagaccccttgccaatttttcttttgcattcaagtcttttataattcattctatgcaatgctcattttgtccatccaatgcttattctacttgtacagTTTTGGTACAGTACTTGTTTCCCGAGCGATTAGAGCTGCTCATTGTTTGACTTCAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT