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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctttgaaatgctcttgtttgattttatgggaatttgctgtgtgctttgcattgaatgtcctcgcataggttaaaggttattctctattctctttccattcatgtgttccattcgtagCATGCTGAAGACAATGGGGGACTTTACTCAGTTCATTGGTTTAGAGTAGTGCTTGATGAGGCGCATACTATAAAATCCTCTAAAAGCCAAATTTCTATGG

Basic information

species Vitis vinifera
transcript Vv06s0061g01190.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G30540.1 (Glycine max), 3'ss of exon 10
gtagctttgaaatgctcttgtttgattttatgggaatttgctgtgtgctttgcattgaatgtcctcg-cataggttaaaggttattctctattctctttccattcatgtgttccattcgtagCATGCTGAAGACAATGGGGGACTTTACTCAGTTCATTGGTTTAGAGTAGTGCTTGATGAGGCGCATACTATAAAATCCTCTAAAAGCCAAATTTCTATGG
                  |  ||||   |       | |    | |   |   | ||  | |   |  |||   ||||   ||||   ||  |   | |   |  || |||   ||    ||  ||| || || ||||| ||||| | |||| |||  ||||||||||| || |||||||| || ||||| |||||||| |||||||||||||||||| | |
-----------------gtagttgaaagttgaaacctgtatactatctctgatagtggctatttgcttcatttcttaagacttatcaactggtgcatctt--tcaatctgtcttatgtacagAGTGCAGAGGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTTTAG

upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G05390.1 (Glycine max), 3'ss of exon 9
gtagctttgaaatgctcttgtttgattttatgggaatttgctgtgtgctttgcattgaatgtcctcgc---ataggttaaaggttattctctattctctttccattcatgtgttccattcgtagCATGCTGAAGACAATGGGGGACTTTACTCAGTTCATTGGTTTAGAGTAGTGCTTGATGAGGCGCATACTATAAAATCCTCTAAAAGCCAAATTTCTATGG
                           |  | | ||  ||     |   |   || |    |  | ||   ||   ||||   ||||   ||  |   | |   |   ||| ||  ||    || |||| || || ||||| ||||| | |||| |||  ||||||||||| || |||||||| || ||||| |||||||| |||||||||||||||||| | |
--------------------------gtagttgaaacctgtatactatctctgatagtgcttatttgcttcatttcttaagacttatcaactggtgcatctttctctctgtctt--atgtacagAATGCAGAGGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcataggttaaaggttattctctattctctttccattcatgtgttccattcgtagCATGCTGAAGACAATGGGGGACTTTACTCAGTTCATTGGTTTAGAGTAGTGCTTGATGAGGCGCATACTATAAAATCCTCTAAAAGCCAAATTTCTATGG
                                           ttccattc  CT-rich tract
              ttattct  TA-rich tract