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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatactaatatctgttctcgttctttaatttctcatttattccgaataacattgaacattttgcataccaatgatatatggttcatgatctccagGTTTGGAACAATGATGTCAAATTTTATTGTGTCAAAGATTCTCTAGGCATTCCGATAGCATACTTTTACTTTGATCCATATGCTCGTCCTTCAGAAAAAC

Basic information

species Vitis vinifera
transcript Vv06s0061g01070.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01070.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os02g58340.1 (Oryza sativa), 3'ss of exon 9
gtaatatactaatatctgttctcgttctttaatttctcatttattccgaataacat-tgaacattttgcataccaatgatatatggttcatgatctccagGTTTGGAACAATGATGTCAAATTTTATTGTGTCAAAGATTCTCTAGGCATTCCGATAGCATACTTTTACTTTGATCCATATGCTCGTCCTTCAGAAAAAC
                     |      ||  |||||  | |    | ||  | || | ||  || ||||  | | |||    ||  | |   | | ||||||||||| | ||||||||||||||| |||||||||||||||      |  ||  | || || || ||||| ||||||||| |  | || || || || |
--------------------gtaagcagttgttttcttttcttcagcaaactatatgttaatgttctgca-gctattgaccactgagttacctttttcagGTTTGGAATAGTGATGTCAAATTTTACTGTGTCAAAGATTCTTCGAATAGCCCTGTTGCTTATTTCTACTTCGATCCATATTCAAGACCATCTGAGAAGC

upper sequence: Vv06s0061g01070.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G133919_T01 (Zea mays), 3'ss of exon 9
gtaatatactaatatctgttctcgttctttaatttctcatttattccgaataacat--tgaacattttgcataccaatgatatatggttcatgatctccagGTTTGGAACAATGATGTCAAATTTTATTGTGTCAAAGATTCTCTAGGCATTCCGATAGCATACTTTTACTTTGATCCATATGCTCGTCCTTCAGAAAAAC
                             ||| | ||  || | |     | ||||  |  ||||| |||  |    ||| |  ||  |     | | ||| | ||| ||| ||||||||||||||||||||||||||| |||    | |  ||  | || ||||||||||| ||||| ||| |  | || || ||||| |
----------------------------gtaagtactggttcacttttcttcacatgatacacattctgcg-attgttgacaagtgactacc--ttttcagATCTGGCACAGTGATGTCAAATTTTATTGTGTCAAAGACTCTTCCAGTAGCCCTGTTGCTTACTTTTACTTCGATCCTTATTCAAGACCATCTGAAAAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgaataacattgaacattttgcataccaatgatatatggttcatgatctccagGTTTGGAACAATGATGTCAAATTTTATTGTGTCAAAGATTCTCTAGGCATTCCGATAGCATACTTTTACTTTGATCCATATGCTCGTCCTTCAGAAAAAC
   gaataac  putative branch site (score: 2)
                                                tctcc  putative PPT
                             aatgatatat  TA-rich tract