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gtaagtttcaacaatcctgcttcagaggagcttaacaatgagttaacaatcatgatgaaaactaacagttagtaattgaatttacattactagGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAATTTGTCAACGCAGGACAGCTGAGTGAGAGTAGTTCACCGAGGACTGTGTT
species | Vitis vinifera |
transcript | Vv06s0061g01030.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACT GTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAATEST: gi|351043367|gb|FQ451419.1|FQ451419
genomic: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACTgtaagtttca ... acattactagGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAAT
EST: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACT GTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAATEST: gi|352789949|gb|FQ479559.1|FQ479559
genomic: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACTgtaagtttca ... acattactagGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAAT
EST: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACT GTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAATEST: gi|349811312|gb|FQ407538.1|FQ407538
genomic: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACTgtaagtttca ... acattactagGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAAT
EST: CTTTGTTTATGAGTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACT GTTCAATGTCTGTGAATGTGTCCACTAAGAGTAGTAEST: gi|110732513|gb|EE107864.1|EE107864
genomic: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACTgtaagtttca ... acattactagGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTA
EST: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACT GTTCAATGTCTGTGAATGTGTCCACAAGGAGTAGTACTGGAAAAAGTGAATEST: gi|351057266|gb|FQ450973.1|FQ450973
genomic: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACTgtaagtttca ... acattactagGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAAT
EST: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACT GTTCAATGTCTGTGAATGTGTCC
genomic: CTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACTgtaagtttca ... acattactagGTTCAATGTCTGTGAATGTGTCC
tgagttaacaatcatgatgaaaactaacagttagtaattgaatttacattactagGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAATTTGTCAACGCAGGACAGCTGAGTGAGAGTAGTTCACCGAGGACTGTGTT
aactaac putative branch site (score: 1)
ttagtaattgaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcaacaatcctgcttcagaggagcttaacaatgagttaacaatcatgatgaaaactaacagttagtaattgaatttacattactagGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAATTTGTCAACGCAGGACAGCTGAGTGAGAGTAGTTCACCGAGGACTGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA