1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gggtgttggggttgtgtttgtagttaataaaggcacttcaattgatcgtattaatttgttttttctttgatgcttaccttgaattgttttctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGT
species | Vitis vinifera |
transcript | Vv06s0009g03520.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|27579299|gb|CB001994.1|CB001994
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|110391760|gb|EC956760.1|EC956760
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|32246622|gb|CD712441.1|CD712441
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: ACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|34364249|gb|CF405834.1|CF405834
genomic: ACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGNCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|110691134|gb|EE068892.1|EE068892
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|110361505|gb|EC924984.1|EC924984
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|77579348|gb|DV218502.1|DV218502
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|161717568|gb|FC066896.1|FC066896
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|110376904|gb|EC941978.1|EC941978
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|27582830|gb|CB005525.1|CB005525
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: ATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|110730433|gb|EE107509.1|EE107509
genomic: ATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAEST: gi|71874644|gb|DT023699.1|DT023699
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
EST: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG GCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
genomic: TTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtt ... ctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGA
tcgtattaatttgttttttctttgatgcttaccttgaattgttttctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGT
tgcttac putative branch site (score: 2)
ttgttttctttcttt putative PPT
ttaatttgttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtgttggggttgtgtttgtagttaataaaggcacttcaattgatcgtattaatttgttttttctttgatgcttaccttgaattgttttctttctttagGCATTTTTGTAGCATTGGCATTGCGATTTGATGTGTCCAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGT
- - gttgggg
- - - - - - - - - - - - -aataaag
- - - - - - - - - - - - - - - - -cacttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taccttg