1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgttaataattttgttagcttttagtaaaaaaattaataattttggctcaactttctgttaattcatttcatattgctgataactcactttttgggtagGACTGAAGTTGGCTTACGAGAGCTTCCTAAAGATTCTCCTTTGGGAAGACTAAGAGGAAGTAATAATATT
species | Vitis vinifera |
transcript | Vv06s0009g01460.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCGTTAGATGGGAAGGTGCTTCGTTATGTCTGTGTTATTGAGGGCTCAAG GACTGAAGTTGGCTTACGAGAGCTTCCTAAAGATTCTCCTTTGGGAAGACTEST: gi|110409000|gb|EC974653.1|EC974653
genomic: GCGTTAGATGGGAAGGTGCTTCGTTATGTCTGTGTTATTGAGGGCTCAAGgtattctagg ... ttttgggtagGACTGAAGTTGGCTTACGAGAGCTTCCTAAAGATTCTCCTTTGGGAAGACT
EST: GCGTTAGATGGGAAGGTGCTTCGTTATGTCTGTGTTATTGAGGGCTCAAG GACTGAAGTTGGCTTACGAGAGCTTCCTAAAGATTCTCCTTTGGGAAGACT
genomic: GCGTTAGATGGGAAGGTGCTTCGTTATGTCTGTGTTATTGAGGGCTCAAGgtattctagg ... ttttgggtagGACTGAAGTTGGCTTACGAGAGCTTCCTAAAGATTCTCCTTTGGGAAGACT
ggctcaactttctgttaattcatttcatattgctgataactcactttttgggtagGACTGAAGTTGGCTTACGAGAGCTTCCTAAAGATTCTCCTTTGGGAAGACTAAGAGGAAGTAATAATATT
aactcac putative branch site (score: 2)
ctcacttttt CT-rich tract
ttaattcatttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttaataattttgttagcttttagtaaaaaaattaataattttggctcaactttctgttaattcatttcatattgctgataactcactttttgggtagGACTGAAGTTGGCTTACGAGAGCTTCCTAAAGATTCTCCTTTGGGAAGACTAAGAGGAAGTAATAATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactcac