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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattattctgactacagtcctattgacctctctcgtcacacacctaaatctgaaacagagaaattcagttctagttctattttccatcaaatctcagGTTATCGCTGGCATTTTCAAGAGAATGGACAAAACTGCCGACTTAGAGAATGTTAGTGCTTGATTGAGCTGGGAATCAGAGGTTATGCGCTGCGTTTTGT

Basic information

species Vitis vinifera
transcript Vv06s0004g07380.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361598|gb|EC925084.1|EC925084
EST:     CTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG                         GTTATCGCTGGCATTTTCAAGAGAATGGACAAAACTGCCGACTTAGAGAAT
genomic: CTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattattat ... caaatctcagGTTATCGCTGGCATTTTCAAGAGAATGGACAAAACTGCCGACTTAGAGAAT
EST: gi|110687429|gb|EE064834.1|EE064834
EST:     CTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG                         GTTATCGCTGGCATTTTCAAGAGA-TGGACAAAACTGCCGACTTANAGAAT
genomic: CTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAGgtattattat ... caaatctcagGTTATCGCTGGCATTTTCAAGAGAATGGACAAAACTGCCGACTTAGAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaaatctgaaacagagaaattcagttctagttctattttccatcaaatctcagGTTATCGCTGGCATTTTCAAGAGAATGGACAAAACTGCCGACTTAGAGAATGTTAGTGCTTGATTGAGCTGGGAATCAGAGGTTATGCGCTGCGTTTTGT
 acctaaa  putative branch site (score: 3)
                                ttctattttccatc  putative PPT
                                ttctatttt  TA-rich tract