1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccccaaagagcaatctgggttgttgttttaccatctttttttggatttgtatgattgaaaagtcatgtgacggcggggtttggtaatgttgggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAGCCTGTTCCCCAGGAACTCCTGGATAGGGTCCTAACTGCCC
species | Vitis vinifera |
transcript | Vv06s0004g04940.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAG GACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|30302294|gb|CB979088.1|CB979088
genomic: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaac ... gggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAG GACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|30330590|gb|CD013852.1|CD013852
genomic: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaac ... gggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAG GACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|110390056|gb|EC954941.1|EC954941
genomic: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaac ... gggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAG GACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
genomic: AACTGCGAGCTTTTGATAATGCAAAACACCGAACTTATGTAGATTTGAAGgtaagggaac ... gggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
tttgtatgattgaaaagtcatgtgacggcggggtttggtaatgttgggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAGCCTGTTCCCCAGGAACTCCTGGATAGGGTCCTAACTGCCC
attgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccaaagagcaatctgggttgttgttttaccatctttttttggatttgtatgattgaaaagtcatgtgacggcggggtttggtaatgttgggtatgcagGACAAGTGGAAAACTCTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAGCCTGTTCCCCAGGAACTCCTGGATAGGGTCCTAACTGCCC
ccccaaa
- - - - - - - - gggttgt
- - - - - - - - - - - - - - - ccatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcgggg