Sequence
atgc intronic sequence ATGC exonic sequencegtaattcaatttactttctcactgtactcatgttgtgataaataatctttcattatataactatagaataaatctatctgcggttgtcctgtcattgtcttgattttcttctcagtgttttcaaacctcaactggttttaaaagtgaaattgttctgtgattaaacagATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G40430.1 (Glycine max), 3'ss of exon 9
gtaattcaatttactttctcactgtactcatgttgtgataaataatctttcattatataactatagaataaatctatctgcggttgtcctgtcattgtcttgattttc------ttctcagtgttttcaaacctcaactggttttaaaagtgaaattgttctgtgattaaacagATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTA
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-----------------------------------------------------------------------------------gtatttttttatttcccaaatttttgaggaattgaaaacatcttcaatgtaacattatctaataaagagcctgcatttaatgatttcccagATGCAGGAGGCACTGCAACGTGCAACTTTCGATAGCAATTCTCAAGTTGGCATAATCCTCCATCCAATGGATGCAGTGGAATCACCACCTACATATTTTA
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G04970.1 (Glycine max), 3'ss of exon 9
gtaattcaatttactttctcactgtactcatgttgtgataaataatctttcattatataactatagaataaatctatctgcggttgtcctgtcattgtcttgattttc------ttctcagtgttttcaaacctcaactggttttaaaagtgaaattgttctgtgattaaacagATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTA
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-----------------------------------------------------------------------------------gtatttttttatttcccaaatttttgaggaattgaaaacatcttcaatataacattatctaatgaagagtttgcatttaatgatattccagATGCAGGAGGTACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATCTTCCATCCAATGGATGCAGTGGAGTCACCACCTACATATTTTA
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G15730.1 (Glycine max), 3'ss of exon 9
gtaattcaatttactttctcactgtactcatgttgtgataaataatctttcattatataactatagaataaatctatctgcggttgtcctgtcattgtcttgattttcttctcagtgttttcaa--acctcaactggttttaaaagtgaaattgttctgtgattaaacagATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTA
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----------------------------------gtatctttccccctcacatttgttggatcctcactaatttccccccctttttttccctttaatttttgaggag-ttcaaaacatctttgatgatttctattgtccattaaagagattgcatcttttgattttccagATTCAGGAGGCACTGGAACGTGCAACTTTTGACAGCAGTTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTA
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G07740.1 (Glycine max), 3'ss of exon 9
gtaattcaatttactttctcactgtactcatgttgtgataaataatctttcattatataactatagaataaatctatctgcggttgtcctgtcattgtcttgattttcttctcagtgttttcaaacctcaactggttttaaaagtgaaattgttctgtgattaaacagATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTA
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------------------------------------------gtatctttcccccttcaaatttgt--tggatcc-tcactatttttttttccctttaattttttaggacttcaaaactttgattcct--attgcccattaaagagattgcatcttttgattttccagATTCAGGAGGCACTGCAGCGTGCAACTTTTGACAGTAGTTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtgttttcaaacctcaactggttttaaaagtgaaattgttctgtgattaaacagATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTA
ttttaaaagtgaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattcaatttactttctcactgtactcatgttgtgataaataatctttcattatataactatagaataaatctatctgcggttgtcctgtcattgtcttgattttcttctcagtgttttcaaacctcaactggttttaaaagtgaaattgttctgtgattaaacagATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG