Sequence
atgc intronic sequence ATGC exonic sequence...cacgggccactattttagcgcctctttttaataaaattacttttctttacttataaaaaatatgtatatattcttctctaagtgtgtgtgttttctgcagTTTTGTTGGAAGGATATTTGATCATGCATTGGAAGATTCGCATTCAAAATCTGGCCTTGTCCACTCATTGTCTGTTTGTATTTCTTTGTTGGATCCGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G08100.1 (Glycine max), 3'ss of exon 9
cacgggccactattttagcgcctctttttaataaaattacttttctttacttataaa-aaatatgtatatattcttctctaagtgtgtgtgttttctgcagTTTTGTTGGAAGGATATTTGATCATGCATTGGAAGATTCGCATTCAAAATCTGGCCTTGTCCACTCATTGTCTGTTTGTATTTCTTTGTTGGATCCGAAA
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-------------------gttttgtgttgcaaggctttactttttttttttataaatatatgcctgtaaattgattattaaaattgt---tactttgcagTTTTGTTGCAAAAATTTTGGGTTATGCATTGGAAGATTCACAATCAAAGTCTAGCCTTGTCAACTCACTTTCAGTGTGTATTTCTTTGTTGGATCCCAAA
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G20500.1 (Glycine max), 3'ss of exon 9
cacgggccactattttagcgcctctttttaataaaattacttttctttacttataaaaaatatgtatatattcttctctaagtgtgtgtgtt-ttctgcagTTTTGTTGGAAGGATATTTGATCATGCATTGGAAGATTCGCATTCAAAATCTGGCCTTGTCCACTCATTGTCTGTTTGTATTTCTTTGTTGGATCCGAAA
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-----------------------gttttgtgttgcaaggctttattttatttttaataaatatatgcctgtaaattgattattaaaattgttactttgcagTTTTGTTGCAAAAATTTTGGGTTATGCATTGGAAGATTCACAATCAATGTCTAGCCTTGTCAACTCTCTTTCAGTGTGTATTTCTTTGTTGGATCCCAAA
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G29710.1 (Glycine max), 3'ss of exon 9
cacgggccactattttagcgcctctttttaataaaattacttttctttacttataaaaaatatgtatatattcttctctaagtgtgtgtgttttctgcagTTTTGTTGGAAGGATATTTGATCATGCATTGGAAGATTCGCATTCAAAATCTGGCCTTGTCCACTCATTGTCTGTTTGTATTTCTTTGTTGGATCCGAAA
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-------------------gtttgtattctatggtttta-tgttcttctctgatatgtaactctgaaataattatgtatatttttatatat-----gcagTTTTGTTGCCAAAATTTTGGATCATGCACTGGAAGATTCACAATCAAAGTCTAGCCTTGTGAACTCACTTTCAGTGTGTGTTTCTTTATTGGATCCCAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttacttataaaaaatatgtatatattcttctctaagtgtgtgtgttttctgcagTTTTGTTGGAAGGATATTTGATCATGCATTGGAAGATTCGCATTCAAAATCTGGCCTTGTCCACTCATTGTCTGTTTGTATTTCTTTGTTGGATCCGAAA
tgttttct CT-rich tract
ttataaaaaatatgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacgggccactattttagcgcctctttttaataaaattacttttctttacttataaaaaatatgtatatattcttctctaagtgtgtgtgttttctgcagTTTTGTTGGAAGGATATTTGATCATGCATTGGAAGATTCGCATTCAAAATCTGGCCTTGTCCACTCATTGTCTGTTTGTATTTCTTTGTTGGATCCGAAA
- - -gccacta
- - - - - - - - - -gcctctt
- - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtg