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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgtttgtcataaaacatacaagtaatcacttttcatttacatttgcatttttatatgtcctgtgaagtttagaaactcttatgtccatgatccttgcttcttattacagGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATCGTGATAG

Basic information

species Vitis vinifera
transcript Vv06s0004g02050.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 10
gtaacttgtttgtcataaaacatacaagtaatcacttttcatttacatttgcatttttatatgtcctgtgaagtttagaaactcttatgtccatgatccttgcttcttattacagGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATCGTGATAG
       ||     | ||| | |||||      |||| |||||     | ||||| ||          | ||   |  ||  ||  ||    ||||   || ||| || | ||||||||||||||| |||||||| |||||||||||||||||||||||  | || || ||||
-------gtaatctacaaatcctacaacaggaaacttgtcattagg--tcgcattatt----------taaaacatgcaa--tcacattgtgatgaattttccttttt-tcacagGTTCTGTACAATATTCTTGACTGGCCTACTAAGCCACATTCCAAGCTAATTGTCATAG

upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 8
gtaacttgtttgtcataaaacatacaagtaatcacttttcatttacatttgcatttttatatgtcctgtgaagtttagaaactcttatgtccatgatccttgcttcttattacagGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATCGTGATAG
                     |  | |  ||||           | ||| |||||    |   | || | ||   |  ||  ||  ||    ||||   || ||| || | ||||||||||||||| |||||||| |||||||||||||||||||||||  | || || ||||
-------------------gtaatctaccaatcctacaatgggaaaattggcattaggttgcattctttaaaacatgtaa--tcacattgtgatgaattttccttttt-tcacagGTTCTGTACAATATTCTTGACTGGCCTACTAAGCCACATTCCAAGCTAATTGTCATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702580|gb|EE081092.1|EE081092
EST:     GTATTCTACTTATTGATGAACTTGATCTTCTCGTAACCAGAAATCAGTCG                         GTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATC
genomic: GTATTCTACTTATTGATGAACTTGATCTTCTCGTAACCAGAAATCAGTCGgtaacttgtt ... cttattacagGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcctgtgaagtttagaaactcttatgtccatgatccttgcttcttattacagGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATCGTGATAG
                                    tccttgcttcttatt  CT-rich tract
                                           ttcttatta  TA-rich tract