1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gacattaaggggtttttcttggtctttacaaccaagattttgggttttacaaattctatggtattctatgtcagtaagtgacttcttccttgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAGGATCAG
species | Vitis vinifera |
transcript | Vv06s0004g01860.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTGGCAACTCTTTCTGGTTTTGCTGAGCCCCTGGGTGTTATAATTGTAG CCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAGEST: gi|30251808|gb|CB969541.1|CB969541
genomic: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAGgtatgtcagt ... tgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAG
EST: ACTGGCAACTCTTTCTGGTTTTGCTGAGCCCCTGGGTGTTATAATTGTAG CCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAGEST: gi|110382518|gb|EC946816.1|EC946816
genomic: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAGgtatgtcagt ... tgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAG
EST: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAG CCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAGEST: gi|110693804|gb|EE070356.1|EE070356
genomic: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAGgtatgtcagt ... tgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAG
EST: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAG CCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGANGGCCTGTTAGEST: gi|110689440|gb|EE065664.1|EE065664
genomic: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAGgtatgtcagt ... tgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAG
EST: ACTGGCAACTCTTTCTGGCTTTGCTGAACCCCTGGGTGTTATAAATGTAN CCTATCTGTTCCCAAGCAGCTTGAATCCANAAATTCTTGGAGGGC-TGTTAEST: gi|110698572|gb|EE076222.1|EE076222
genomic: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAGgtatgtcagt ... tgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTG-AGGGCCTGTTA
EST: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAG CCTATCTGTTCCCAAGCAGCTTGAATCCGGAAATTCTTGAGGGCCTGTTAA
genomic: ACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAGgtatgtcagt ... tgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAG
tttacaaattctatggtattctatgtcagtaagtgacttcttccttgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAGGATCAG
cttcttccttgcatt CT-rich tract
aaattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacattaaggggtttttcttggtctttacaaccaagattttgggttttacaaattctatggtattctatgtcagtaagtgacttcttccttgcattgcagCCTATCTGTTCCCAAGCAGCTTGAATCCAGAAATTCTTGAGGGCCTGTTAGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - ggggttt
- - - - - - - -ttcttgg
- - - - - - - - - - - - - -acaacca
- - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - acaaatt