1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tccatatttcttctccaaccaaacaagatcctgttacgctgtcctctgtttctacgtgcacttaaatactaactgatgtatttttggcttaacatctcagATGCAGGGGGCAGGCCAATCTTCTGCCATAAATTTGCGGATACCGGTTTGGGCATATTCAAGTGGTGCCAAGGCAGCAGTAAATGCCCAGGCTTTGCCTG
species | Vitis vinifera |
transcript | Vv06s0004g01650.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGGGATCCTTACCTTCGAATCACTTTGACATTTTCTCCAAAGAAG ATGCAGGGGACAGGCCAATCTTCTGCCATAAATTTGCGGATACCGGTTTGGEST: gi|37184261|gb|CF603615.1|CF603615
genomic: TTGGGATCCTTACCTTCGAATCACTTTGACATTTTCTCCAAAGAAGgtattttttt ... aacatctcagATGCAGGGGGCAGGCCAATCTTCTGCCATAAATTTGCGGATACCGGTTTGG
EST: TTTCTTGGGATCCTTACCTTCGAATCACTTTGACATTTTCTCCAAAGAAG ATGCAGGGGGCAGGCCAATCTTCTGCCATAAATTTGCGGATACCGGTTTGG
genomic: TTTCTTGGGATCCTTACCTTCGAATCACTTTGACATTTTCTCCAAAGAAGgtattttttt ... aacatctcagATGCAGGGGGCAGGCCAATCTTCTGCCATAAATTTGCGGATACCGGTTTGG
ctgtttctacgtgcacttaaatactaactgatgtatttttggcttaacatctcagATGCAGGGGGCAGGCCAATCTTCTGCCATAAATTTGCGGATACCGGTTTGGGCATATTCAAGTGGTGCCAAGGCAGCAGTAAATGCCCAGGCTTTGCCTG
ttaaatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatatttcttctccaaccaaacaagatcctgttacgctgtcctctgtttctacgtgcacttaaatactaactgatgtatttttggcttaacatctcagATGCAGGGGGCAGGCCAATCTTCTGCCATAAATTTGCGGATACCGGTTTGGGCATATTCAAGTGGTGCCAAGGCAGCAGTAAATGCCCAGGCTTTGCCTG
- - - - - - - ccaacca
- - - - - - - - - - -aacaaga
- - - - - - - - - - - - - - - ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgt