Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagcctgttgctttatttcctccatcttcatgttttgacgagtaccacttctcgtaggatcacatagtgtttaaattgtcacctgcagATATGGGGGAGGCATGAGTTCAGCCAAAGCCGCTCTAGAAAGTGATACACGA

Basic information

species Vitis vinifera
transcript Vv06s0004g01310.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G31780.1 (Glycine max), 3'ss of exon 8
---gtatagcctgttgctttatttcctccatcttcatgttttgacgagtaccacttctcgtaggatcacatagtgtttaaattgtcacctgcagATATGGGGGAGGCATGAGTTCAGCCAAAGCCGCTCTAGAAAGTGATACACGA-
   ||      || |     || || | ||| || || ||||      | ||  |  |   | | |     | ||  |  | ||       ||||||||| || || |||||||| || ||||| ||| |||||||||||||| || 
tgtgttggatatgctttaaaatctcatacatatttat-ttttattacattcctttattgacaaggttttgaaatgcctcgagtg-------cagaTATGGTGGTGGTATGAGTTCTGCAAAAGCTGCTTTAGAAAGTGATACAAGAG

upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G45990.1 (Glycine max), 3'ss of exon 9
--gtatagcctgttgctttatttcctccatcttcatgttttgacgagtaccacttctcgtaggatcacatagtgtttaaat-tgtcacctgcagATATGGGGGAGGCATGAGTTCAGCCAAAGCCGCTCTAGAAAGTGATACACGA
  || | |  | | ||||||    ||| || | |||||||  |    ||  || | || |    | |||  || || ||||   | |  ||||||||||| || || |||||||| || ||||| ||| |||||||||||||| ||
gtgtgttggatat-gctttaaaatctc-atatacatgttt--atttttattacat-tcttttattgacaaggttttgaaatgccttatatgcagATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCTTTAGAAAGTGATACAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77583292|gb|DV220679.1|DV220679
EST:     GGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG                         ATATGGGGGAGGCATGAGTTCAG
genomic: GGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGGgtatagcctg ... tcacctgcagATATGGGGGAGGCATGAGTTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgacgagtaccacttctcgtaggatcacatagtgtttaaattgtcacctgcagATATGGGGGAGGCATGAGTTCAGCCAAAGCCGCTCTAGAAAGTGATACACGA
 ttttgac  putative branch site (score: 3)
                              atagtgtttaaatt  TA-rich tract