Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaaccttttttaaactcaccgctgaatcctgtactacaagtgactaaattcatatgctatatatttttctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTTCATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCC

Basic information

species Vitis vinifera
transcript Vv05s0077g02310.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g02310.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 3'ss of exon 10
gttagaaccttttttaa-actcaccgctgaatcctgtactacaagtgactaaattcatatgctatatatttttctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTTCATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCC
|||||    |  ||  |     |  || | || | |  |     |  | ||   | | ||  | | | ||||  ||| || |||||||| ||||||||||||| ||| |||||||||| || ||  | || || ||||| ||||| || || ||||| ||||| || || ||||| || ||  
gttagcttatagttcgatgtagattgcagtatacagggcatattggcattatcgtaacattttgtttcttttcattt-ttaagGTTATTAGGTCTTATCATGGCCATTTGAGTGGGGTGTACTGCCTTGCTCTACATCCAACAATCGATATCTTGCTGACTGGTGGTCGCGATTCAGTTTGTA

upper sequence: Vv05s0077g02310.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G16650.1 (Arabidopsis thaliana), 3'ss of exon 9
-------------------gttagaaccttttttaaactcaccgctgaatcctgtactacaagtgactaaattca-tatgctatatatttttctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTTCATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCC
                    ||     | | | || | | |   ||     |   |    || |    |  | || | |  |    |||| |||||| | |||||||||| ||||||||||||||| ||  ||| ||||| ||||| || |||||||| ||  ||||  || | || || || || || || ||||||||| 
gtttaaactcgatgatggatttcatctcatctgtatattaattactcttctcctgatctgaacttttcatgtccaatgtctttggaatttgtctttgat-agGTTATTCGATCTTATCATGGTCATTTGCATGGCGTTTACTGTTTAGCTCTTCATCCTACTCTTGATGTTGTACTAACCGGAGGGCGAGACTCTGTCTGCA

upper sequence: Vv05s0077g02310.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: PP1S402_49V6.1 (Physcomitrella patens), 3'ss of exon 8
-------------------------------------gttagaacct--tttttaaactcaccgctgaatcc-tgtactacaagtg------actaaattcatatgctata-tatttttctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTTCATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCC
                                      |  | |  |  ||  | ||     |  ||||||| ||||||| | ||        || |     | |||| |  | | ||  ||||| |||||||||||||| |||||||||||| ||||||| |||||||| || || |||||||| ||| |||| ||| |  | |||||||| || ||||| || ||||
gtgtgtccaggcttttacgacgcttgttggttgtagcatccgtaattagttcatgaatgtgtctatgaatccatgtactatatgtatttatcgctgaggatctttgctctggtgtattggtttgtgcagGTTATTCGGTCATATCATGGTCATTTGAGTGGAGTTTATTGCTTAGCTCTTCATCCTACACTTGATATTCTCATGACTGGGGGTCGAGATTCAGTGTGCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416775|gb|EC982779.1|EC982779
EST:     CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAG                         GTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
genomic: CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAGgttagaacct ... ctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
EST: gi|77578499|gb|DV218043.1|DV218043
EST:     CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAG                         GTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
genomic: CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAGgttagaacct ... ctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
EST: gi|349818063|gb|FQ408838.1|FQ408838
EST:     CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAG                         GTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
genomic: CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAGgttagaacct ... ctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
EST: gi|110724126|gb|EE099691.1|EE099691
EST:     CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAG                         GTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
genomic: CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAGgttagaacct ... ctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
EST: gi|110688178|gb|EE066434.1|EE066434
EST:     CAGCTGGTGATGACAA-CAAGTTAAATGCTGGGACCTTGAACAGAATAAA                         GTTATTCGGTCTTATCATGGTCATCTG
genomic: CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAGgttagaacct ... ctttgttcagGTTATTCGGTCTTATCATGGTCATCTG
EST: gi|161707291|gb|FC057696.1|FC057696
EST:     GACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAG                         GTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
genomic: GACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAGgttagaacct ... ctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTT
EST: gi|110728878|gb|EE104832.1|EE104832
EST:     CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAAAAGAATAAA                         GTTATTCNGTCTTATCATGGTCATCTGAGTGGGGGTTTATTGTTTGGCACT
genomic: CAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAGgttagaacct ... ctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGG-TTTATTGTTTGGCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatcctgtactacaagtgactaaattcatatgctatatatttttctttgttcagGTTATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTTCATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCC
                  gactaaa  putative branch site (score: 2)
                                      tatttttctttgttc  putative PPT
                     taaattcatatgctat  TA-rich tract