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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatttactttgaagtcctatagatgtaagaattgagctatagtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgtttatatacagGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTA

Basic information

species Vitis vinifera
transcript Vv05s0077g01830.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 9
----------gtatgtaatttactttgaagtcctatagatgta----agaattgagctat--------agtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgt--ttatatacagGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTA
                || ||    |  |||| ||| | | ||    | | ||  | | |        |  |    |  || || || | ||||| ||||  | || |  ||    |  ||||| ||||||| || ||||||||||| |||||| ||||| |||| ||||||||||||||||| || ||| | |||||||| |||||||||||||  || || ||||| 
gtatgcaattacccaaaacttggcgtttagtcttatggttttataacaaacttatgttttttttatcaaacaacatcaattatactgcacttttgtagtttattatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTTGATTTGTGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 9
------------------gtatgtaatttactttgaagtcctata--gatgtaagaattgagctat--agtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgt--ttatatacagGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTA
                   | || | ||    ||   ||  ||||   |  | |   ||    |||  |  |||  |  || || |  | |||||  ||| || || |  ||    |  ||||| ||||||| || ||||||||||| |||||| ||||| | || |||||||||||||| || |||||| |||||||||| |||||||||||||  || || ||||| 
gtatgcaattacccaaaactttgcatttagtcttatggttttataacaaacttatgttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAATCATATTTGCTTTATTGGTGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 9
---------------------------------------------------gtatgtaatttac--tttgaagtcctat---agatgtaagaattgagctatagtatttcctgttgtaatgaatttttgaagttgctgat-gtcatttctgtttatatac--agGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTA
                                                    | | || ||||   ||   |||   ||   ||||  |    |  |    |  ||| |        ||  ||      | |    ||||  | |  ||||  | | |    ||||| |||||||||||||| ||||| || ||| | ||| |||||||||| ||||| || ||  | || |||||||| |||||||| || ||||| ||||| 
gtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctagGTCTCACCATGAAAAACTCGTCATCGTCGATAATCAGGTTTGCTTTATCGGAGGGCTAGACTTGTGTTTTGGCCGATATGACACGTTTGAACATAAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctgttgtaatgaatttttgaagttgctgatgtcatttctgtttatatacagGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTA
                           tgctgat  putative branch site (score: 3)
                                      tttctgttt  putative PPT
       ttgtaatgaattttt  TA-rich tract