Sequence
atgc intronic sequence ATGC exonic sequencegtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtattttggattgaccacctttgttggtgatatagGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 3'ss of exon 9
gtatgttatcttga-ttcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtatttt------ggattgaccacctttgtt---ggtgatatagGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA
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gtatactaccttgacttgctgcactgccttttggcttgtgcagttgtgtgcaatgcaacttatgtatgtcacctttgaacggaatttagaactcatgttttgtcttgcatagGTACTTGGTGTCTGAGGGCTGCATCAAGCCATTGTGTGACCTTCTTGTCTGCCCTGATCCGAGAATTGTAACAGTTTGTCTGGAGGGTCTGGAGAATATT
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G03430.1 (Glycine max), 3'ss of exon 9
gtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtattttggattgaccacctttgttggtgatatagGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA
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gtatgttatttcctctgattggttgttctttataatgc---------acactttttatgaatttgtggtattc---actcatc--ttatgctgtt--tcaagGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTGCCCAGACCCAAGAATTGTTACTGTCTGTTTAGAAGGCCTAGAGAATATT
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA07G37180.1 (Glycine max), 3'ss of exon 10
gtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtattttggattgaccacctttgttggtgatata-gGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA
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gtatgtgatttc---ctctgattggttgttctttat--------aatgcacactttttatgaatttgcggtattcactta------tcttatggtgattcaagGTATTTGGTGAGTCAGGGTTGCGTAAAGCCTCTTTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATT
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G04430.1 (Glycine max), 3'ss of exon 9
gtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtattttggattgaccacctttgttggtgatatagGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA
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-------gtatgaattactattat-tactttgctttatgatggcaaattgataattattgaaaatttatgtattgacttg-tcatatgtgattgtaa----gGTATCTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGAATCGTCACTGTCTGTTTAGAAGGACTTGAGAATATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accctcttttaacagacatagtattttggattgaccacctttgttggtgatatagGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA
atagtatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtattttggattgaccacctttgttggtgatatagGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG