Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattaaatctcaatatgctcctttttagacttggtctatggcagactttctaaaacaatgaatttggtgcagTGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG

Basic information

species Vitis vinifera
transcript Vv05s0077g00060.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G34110.2 (Glycine max), 3'ss of exon 9
gtgattaaatc-tcaatatgctcctttttagacttggtctatggcagactttctaaaacaatgaatttggtgcagTGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG
|||||| |    | || ||  ||| || |  ||||  || ||      |||||| | ||  |  ||| | ||||||||||| ||||||||||| ||| |||||||||| || |||||
gtgattcagcaatgaacattttccattatgtactt--tcaatcattagctttctgacact-tatattggttgcagTGGTGGTCTTTTCCCAGAAGGAATTGAGATTGCCAAAATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349821096|gb|FQ404349.1|FQ404349
EST:     TTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAG                         TGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG
genomic: TTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAGgtgattaaat ... tttggtgcagTGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG
EST: gi|349809249|gb|FQ399023.1|FQ399023
EST:     TTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAG                         TGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG
genomic: TTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAGgtgattaaat ... tttggtgcagTGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG
EST: gi|351036039|gb|FQ463884.1|FQ463884
EST:     TTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAG                         TGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG
genomic: TTAAGGAGCAATGATGTGAATGCCTTTGTTTTGGACCTCCGAGATAATAGgtgattaaat ... tttggtgcagTGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctttttagacttggtctatggcagactttctaaaacaatgaatttggtgcagTGGTGGCCTTTTCCCAGAGGGAGTTGAGATTGCTAAGATTTG
                              ttctaaa  putative branch site (score: 2)
                                 taaaacaatgaattt  TA-rich tract