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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttgacatgtgactctcttcttttccttccagttttaacttctaattactataaatttatgtgtgttactatttttcttttggtagGTTTTCAACAATAGTCCAGATGAAACGGCCTATTTCCGTATGTTGTTAAACCGTGAGAATATTCCAAATACTGCGGTCATGATCCAGCCATCTCTAATAT

Basic information

species Vitis vinifera
transcript Vv05s0062g00130.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0062g00130.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G36760.1 (Glycine max), 3'ss of exon 9
gtaattttgacatgtgactctcttcttttccttccagttttaacttctaattactataaatttatgtgtgttactatttttcttttggtagGTTTTCAACAATAGTCCAGATGAAACGGCCTATTTCCGTATGTTGTTAAACCGTGAGAATATTCCAAATACTGCGGTCATGATCCAGCCATCTCTAATAT
|||  |||    ||| | ||||||| | | || |   ||| ||  | || |||         | || |||||   || | |    ||  ||||||| ||||| |||||||| || || || ||||||||||||||||||||| | || ||||||   ||| |||| || ||||| ||||| ||  | ||||
gtaccttttgt-tgtaattctcttcctgttctgct--tttcaaactttatttaac-------tgtgagtgttgaaatgtgt----tgacagGTTTTTAACAACAGTCCAGACGAGACTGCATATTTCCGTATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCTGTTATGATTCAGCCGTCATTGATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545786|gb|CF514018.1|CF514018
EST:     CATTGTTCCCTCAGTTTATGTTTAATCTGCGACGATCACAATTTGTACAG                         GTTTTCAACAATAGTCCAGATGAAACAGCCTATTTCCGTATGTTGTTAAAC
genomic: CATTGTTCCCTCAGTTTATGTTTAATCTGCGACGATCACAATTTGTACAGgtaattttga ... cttttggtagGTTTTCAACAATAGTCCAGATGAAACGGCCTATTTCCGTATGTTGTTAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttaacttctaattactataaatttatgtgtgttactatttttcttttggtagGTTTTCAACAATAGTCCAGATGAAACGGCCTATTTCCGTATGTTGTTAAACCGTGAGAATATTCCAAATACTGCGGTCATGATCCAGCCATCTCTAATAT
        ttctaat  putative branch site (score: 2)
                                  ttactatttttctttt  putative PPT
           taattactataaattt  TA-rich tract