1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cactacttaggaaggaaggagctctgtccaagcatttcttggctataatcatgatagtagttctgctaatattaccatatctggaattcttcaaatgcagAGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAGGGGAATTAATCTGCATCCAAGGACAACTTTATCAGAG
species | Vitis vinifera |
transcript | Vv05s0051g00870.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGGATGGGTGTTGCTGTAGATCTATTTTTCAGAAAGGAACTTCCATTAAG AGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAGEST: gi|294967112|gb|GW839987.1|GW839987
genomic: GGGATGGGTGTTGCTGTAGATCTATTTTTCAGAAAGGAACTTCCATTAAGgttatgtagc ... tcaaatgcagAGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAG
EST: GGGATGGGTGTTGCTGTAGATCTATTTTTCAGAAAGGAACTTCCATTAAG AGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAGEST: gi|110729876|gb|EE106312.1|EE106312
genomic: GGGATGGGTGTTGCTGTAGATCTATTTTTCAGAAAGGAACTTCCATTAAGgttatgtagc ... tcaaatgcagAGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAG
EST: GGGATGGGTGTTGCTGTAGATCTATTTTTCAGAAAGGAAC-TCCATTAAG AGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAGEST: gi|110699093|gb|EE077335.1|EE077335
genomic: GGGATGGGTGTTGCTGTAGATCTATTTTTCAGAAAGGAACTTCCATTAAGgttatgtagc ... tcaaatgcagAGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAG
EST: GGATGGGTGTTGCTGTAAATCTATTTTTCAGAAAGGAACTTNCCATTAAG AG-TTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAGATCTGGGAGCCA
genomic: GGATGGGTGTTGCTGTAGATCTATTTTTCAGAAAGGAACTT-CCATTAAGgttatgtagc ... tcaaatgcagAGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCA
taatcatgatagtagttctgctaatattaccatatctggaattcttcaaatgcagAGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAGGGGAATTAATCTGCATCCAAGGACAACTTTATCAGAG
tgctaat putative branch site (score: 2)
ttcttc putative PPT
taatattaccatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactacttaggaaggaaggagctctgtccaagcatttcttggctataatcatgatagtagttctgctaatattaccatatctggaattcttcaaatgcagAGGTTTTGACGATGAAATGAGGGCAGTAGTTGCAAGAAATCTGGAAGCCAGGGGAATTAATCTGCATCCAAGGACAACTTTATCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - gaaggaa
- - - - - - - - - - - - - tccaagc
- - - - - - - - - - - - - - - - - -ttcttgg