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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccaatcccattttgttctcatctatatacccaattataattatttttcagatactaatttgagatggatattcacagATTGGACAATGAGACTCAAGTGTACACAGAGGGAACAGCAAGGTTTATATATGGCCATGGTACTGCCCTCAAATAATATCAGGCTTGAGAAAAATGGCAG

Basic information

species Vitis vinifera
transcript Vv05s0020g03200.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03200.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G39440.1 (Glycine max), 3'ss of exon 9
----------gtaaggccaatcccattttgttctcatc-tatatacccaattataat----tatttttcagatactaatttgagatggatattcacagATTGGACAATGAGACTCAAGTGTACACAGAGGGAACAGCAAGGTTTATATATGGCCATGGTACTGCCCTCAAATAATATCAGGCTTGAGAAA-AATGGCAG
| || | || | || | || || | || | ||| || | || || | | || | |||| | |||| |||| |||||||||| ||||| || |||||||||| || || ||||| |||||||||||||| | || || | | || ||||||||| || ||
gtaagtggaacttagttctattctatcctcttgcaattgcaattattcgcctatgatattctgttcttgacacacacacttgacac---tattgacagGCTGGACAATGAAACTCATGTATACACAGAGGAAAGTGCTAGGTTCATATATGGCCATGGCAA-GCATGCATAACCAACCAAGCTTGAGAAGTAAAATCAA

upper sequence: Vv05s0020g03200.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G28340.1 (Glycine max), 3'ss of exon 9
----gtaaggcc-aatcccattttgttctcatctatatacccaattata----------attatttttcagatactaatttgagatggatattcacagATTGGACAATGAGACTCAAGTGTACACAGAGGGAACAGCAAGGTTTATATATGGCCATGGTACTGCCCTCAAATAATATCAGGCTTGAGAAAAATGGCAG-----
|| | | | | ||||| | | | | || |||| ||| | || || || |||||| | |||| |||| |||||||||| ||||| || |||||||||| || || ||||| |||||||||||||| | || | | || ||||||||| | |
gtaagtggaacttagttctattttatatcctcttgcaattgcatttattcgcctgtgatattctgttcttgacacacatttgacac---tattgacagGCTGGACAATGAAACTCATGTATACACAGAGGAAAGTGCTAGGTTCATATATGGCCATGGCAAG-----CATGCATAACCAAGCTTGAGAAGTAAAACCAAATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatacccaattataattatttttcagatactaatttgagatggatattcacagATTGGACAATGAGACTCAAGTGTACACAGAGGGAACAGCAAGGTTTATATATGGCCATGGTACTGCCCTCAAATAATATCAGGCTTGAGAAAAATGGCAG
                             tactaat  putative branch site (score: 1)
 aattataattattttt  TA-rich tract