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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccaatcccattttgttctcatctatatacccaattataattatttttcagatactaatttgagatggatattcacagATTGGACAATGAGACTCAAGTGTACACAGAGGGAACAGCAAGGTTTATATATGGCCATGGTACTGCCCTCAAATAATATCAGGCTTGAGAAAAATGGCAG

Basic information

species Vitis vinifera
transcript Vv05s0020g03200.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03200.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G39440.1 (Glycine max), 3'ss of exon 9
----------gtaaggccaatcccattttgttctcatc-tatatacccaattataat----tatttttcagatactaatttgagatggatattcacagATTGGACAATGAGACTCAAGTGTACACAGAGGGAACAGCAAGGTTTATATATGGCCATGGTACTGCCCTCAAATAATATCAGGCTTGAGAAA-AATGGCAG
           | ||  | || | ||  | ||   ||   |  ||  |   ||| ||    | || || | | ||  | |||| |    |||| ||||  |||||||||| ||||| || |||||||||| ||  || ||||| |||||||||||||| |  ||   || |    | || |||||||||  ||   || 
gtaagtggaacttagttctattctatcctcttgcaattgcaattattcgcctatgatattctgttcttgacacacacacttgacac---tattgacagGCTGGACAATGAAACTCATGTATACACAGAGGAAAGTGCTAGGTTCATATATGGCCATGGCAA-GCATGCATAACCAACCAAGCTTGAGAAGTAAAATCAA

upper sequence: Vv05s0020g03200.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G28340.1 (Glycine max), 3'ss of exon 9
----gtaaggcc-aatcccattttgttctcatctatatacccaattata----------attatttttcagatactaatttgagatggatattcacagATTGGACAATGAGACTCAAGTGTACACAGAGGGAACAGCAAGGTTTATATATGGCCATGGTACTGCCCTCAAATAATATCAGGCTTGAGAAAAATGGCAG-----
    ||    |  | | | ||||| |   |   |  |    || ||||           ||| | ||   || ||  |||||| |    |||| ||||  |||||||||| ||||| || |||||||||| ||  || ||||| |||||||||||||| |       ||   |  | || |||||||||  |   |       
gtaagtggaacttagttctattttatatcctcttgcaattgcatttattcgcctgtgatattctgttcttgacacacatttgacac---tattgacagGCTGGACAATGAAACTCATGTATACACAGAGGAAAGTGCTAGGTTCATATATGGCCATGGCAAG-----CATGCATAACCAAGCTTGAGAAGTAAAACCAAATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatacccaattataattatttttcagatactaatttgagatggatattcacagATTGGACAATGAGACTCAAGTGTACACAGAGGGAACAGCAAGGTTTATATATGGCCATGGTACTGCCCTCAAATAATATCAGGCTTGAGAAAAATGGCAG
                             tactaat  putative branch site (score: 1)
         aattataattattttt  TA-rich tract