Sequence
atgc intronic sequence ATGC exonic sequence...tattgcaaatcctttttttttttttttaattataaattaaattaaattattttctcacagtaatctaatggtttccttattttacaatggttccttttagGGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 9
tattgcaaatcctttttttttttttttaattataaattaaattaaattattttctcacagtaatc-taatggtttccttatt-ttacaatggttccttttagGGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAG
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--gtataagttttaagttcattttgtaaatggtgttgctattgatttgatctgctgctatttcttatgtttgttagctcattacttgcgtggttttgattagGGACGCAGCAACCTTCAGCTCTTCTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTATACAAGTGGTACAACTGGAACCCCAAAA
upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 9
tattgcaaatcctttttttttttttttaattataaattaaattaaattattttctcacagtaatc-taatggtttccttat--tttacaatggttccttttagGGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAG
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---tatcagttttaagttcattttgtaaatggtcttgctatggatttgatctgctgctatttattatgtttattacctcattgtttgtgtggttttgacttagGGACGTAGCAACCTTCAGCCCTTTTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAA
upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 3'ss of exon 9
---tattgcaaatcctttttttttttttttaattataaattaaattaaattattttctcacagtaatctaatggtttccttattttacaatggttccttttagGGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAG
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tgagataatatagtcacccagtatctttctcgctgatagcagcacagttgtggtggtacatgttggtttcattgttttctgacca-acaa--atttgtttcagGGTCGTAGTAACCCTCAGCGATTTTTTCCACCAAAACCCGATGATGTTGCAACCATATGCTATACAAGCGGAACAACTGGGACACCCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attattttctcacagtaatctaatggtttccttattttacaatggttccttttagGGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAG
ttcctttt CT-rich tract
ttattttacaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattgcaaatcctttttttttttttttaattataaattaaattaaattattttctcacagtaatctaatggtttccttattttacaatggttccttttagGGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAG
- - -caaatcc
- - - - - - - - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaatgg