Sequence
atgc intronic sequence ATGC exonic sequencegtttgcctccccttaaatccacttgtcaggttgaagcattgaacagaatctcatattagagtgattgtcttcatgcagAGCTTGCAGAACAAGTAATTTCATTGCTTTCTTTCGGCTTGGGAAGAAAGCAAGTTATCTTCAAGCATGCCTAATGCATGCTCACTTTGCTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G28300.1 (Glycine max), 3'ss of exon 8
---------gtttgcctccccttaaatccacttgtcaggttgaagcattgaacagaatctcatattagagtgattgtcttcatgcagAGCTTGCAGAACAAGTAATTTCATTGCTTTCTTTCGGCTTGGGAAGAAAGCAAGTTATCTTCAAGCATGCCTAATGCATGCTCACTTTGCTAAG
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gtaattcctatagaagttagtttttgttt-cttttttggttatcatgtttgtgatctgaccattccttcttgttttcctt--ttcagAGCGTGCCGAACAGGTAATTTTATTGCCTTCTTTCGGCTTGCAAGAAAAGCAACTTATCTTCAAGCATGCCTAATGCATGCTCACTTTTCTAAG
upper sequence: Vv05s0020g02350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G10760.2 (Glycine max), 3'ss of exon 6
------------gtttgcctccccttaaatccacttgtcaggttgaagcattgaacagaatctcatattagagtgattgtcttcatgcagAGCTTGCAGAACAAGTAATTTCATTGCTTTCTTTCGGCTTGGGAAGAAAGCAAGTTATCTTCAAGCATGCCTAATGCATGCTCACTTTGCTAAG
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gttgaaattcctgtagaagttagtttttgttt-cttttttggttatcatgtttgcgatctgaccattccttcttgttttcctt--ttcagAGCGTGCCGAACGGGTAATTTTATTGCCTTCTTTCGGCTTGCAAGAAAAGCAACTTATCTTCAAGCATGCCTAATGCATGCTCACTTTGCTAAG
upper sequence: Vv05s0020g02350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G06290.1 (Arabidopsis thaliana), 3'ss of exon 14
gtttgcctccccttaaatccacttgtcaggt-tgaagcattgaacagaatctca-tattagagtgattgtcttcatgcagAGCTTGCAGAACAAGTAATTTCATTGCTTTCTTTCGGCTTGGGAAGAAAGCAAGTTATCTTCAAGCATGCCTAATGCATGCTCACTTTGCTAAG
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----gtagttccttggatttttttgttggctgttagttttttaacttgatctaagtattgaaaccagtcgtgcaaaacagAGCTTGCAGAACTGGCAACTTCATCGCCTTCTTTCGCCTTGCACGGAAAGCAAGCTATCTTCAAGCATGTCTAATGCATGCTCATTTTTCGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcaggttgaagcattgaacagaatctcatattagagtgattgtcttcatgcagAGCTTGCAGAACAAGTAATTTCATTGCTTTCTTTCGGCTTGGGAAGAAAGCAAGTTATCTTCAAGCATGCCTAATGCATGCTCACTTTGCTAAG
ttgtcttc CT-rich tract
tcatatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgcctccccttaaatccacttgtcaggttgaagcattgaacagaatctcatattagagtgattgtcttcatgcagAGCTTGCAGAACAAGTAATTTCATTGCTTTCTTTCGGCTTGGGAAGAAAGCAAGTTATCTTCAAGCATGCCTAATGCATGCTCACTTTGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG